Locus 862

Sequence ID 2L_DroMel_CAF1
Location 2,456,878 – 2,456,981
Length 103
Max. P 0.691084
window1401

overview

Window 1

Location 2,456,878 – 2,456,981
Length 103
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 86.20
Mean single sequence MFE -37.88
Consensus MFE -30.49
Energy contribution -31.33
Covariance contribution 0.85
Combinations/Pair 1.06
Mean z-score -2.09
Structure conservation index 0.80
SVM decision value 0.33
SVM RNA-class probability 0.691084
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2456878 103 + 22407834
UGUCUAAAGCCAAGUGUCUAAGCCGACU------GGCGAGUCGAGUUUGUCUUGGUUACGGUUCAGUUCUGGCCACGUCUUUAGGCUGUGGCAUCUGUGCCG--U-UGUUGG
.......(((((((....((((((((((------....))))).))))).)))))))(((((.(((.....((((((((....))).)))))..))).))))--)-...... ( -38.50)
>DroSec_CAF1 36041 103 + 1
UGUCUAAAGCCAAGUGUCUAAGCCGACU------GGCGAGUCGAGUUUGUCUUGGUAACGGUUCAGUUCUGGCCACGUCUUUAGGCUGUGGCAUCUGUGCCG--U-UGUUGG
........((((((....((((((((((------....))))).))))).))))))((((((.(((.....((((((((....))).)))))..))).))))--)-)..... ( -39.40)
>DroSim_CAF1 37616 103 + 1
UGUCUAAAGCCAAGUGUCUAAGCCGACU------GGCGAGUCGAGUUUGUCUUGGUUACGGUUCAGUUCUGGCCACGUCUUUAGGCUGUGGCAUCUGUGCCG--U-UGUUGG
.......(((((((....((((((((((------....))))).))))).)))))))(((((.(((.....((((((((....))).)))))..))).))))--)-...... ( -38.50)
>DroEre_CAF1 38136 103 + 1
UGUCUAAAGCCAAGUGUCUAAGCCGACU------GGCGAGUCGAGUUUGUCUUGGUUACGGUUCAGUUCUGGCCACGGCUUUAGCCUGUGGCAUCUGUGCCG--U-UGUUGG
.......(((((((....((((((((((------....))))).))))).)))))))(((((.(((.....((((((((....))).)))))..))).))))--)-...... ( -41.20)
>DroYak_CAF1 37837 110 + 1
UGUCUAAAGCCAAGUGUCUAAGCCGACUCGAGCCGGCGAGUCGAGUUUGUCUUGGUUACGGUUCAGUUUUGGCCACGUCUUUAGGCUGUGGCAUCUGUGCCG--UUUGUUGG
.......(((((((....((((((((((((......))))))).))))).)))))))(((((.(((.....((((((((....))).)))))..))).))))--)....... ( -44.10)
>DroAna_CAF1 44709 92 + 1
AACCUAAAGCCAAGUGUCUAAGCCGCAU---GUCUUCGAGUCGAGUUUGCCUUGGUCACGGCUCAGUUAGGUCC----------------GCAUCUGUGCCGAAU-UGUCGG
.((((((((((..(((.(((((..(((.---..(((......)))..)))))))).)))))))...)))))).(----------------((....)))((((..-..)))) ( -25.60)
>consensus
UGUCUAAAGCCAAGUGUCUAAGCCGACU______GGCGAGUCGAGUUUGUCUUGGUUACGGUUCAGUUCUGGCCACGUCUUUAGGCUGUGGCAUCUGUGCCG__U_UGUUGG
.......(((((((....((((((((((..........))))).))))).))))))).((((.(((.....((((((((....))).)))))..))).)))).......... (-30.49 = -31.33 +   0.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:27 2006