Locus 860

Sequence ID 2L_DroMel_CAF1
Location 2,450,444 – 2,450,562
Length 118
Max. P 0.686048
window1398

overview

Window 8

Location 2,450,444 – 2,450,562
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 87.88
Mean single sequence MFE -26.38
Consensus MFE -19.22
Energy contribution -19.94
Covariance contribution 0.72
Combinations/Pair 1.15
Mean z-score -1.84
Structure conservation index 0.73
SVM decision value 0.32
SVM RNA-class probability 0.686048
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2450444 118 + 22407834
UAUAUAAUAAAACUGUUGUGUUUAAUAGUCAGAAGCUUGCUUAAAAGGAAGCAUUUGUUCAAAUCUUUAAUCGAGAGCAAAACGCAAUGCUUUUAUUAAGGCAAGUGAUUGUUCUCCA
.((((((((....))))))))..(((((((....((((((((.((..((((((((((((....((((.....))))....)))).))))))))..)).)))))))))))))))..... ( -29.60)
>DroSec_CAF1 29626 118 + 1
UUUAAAAUAAAACUAUUGUGUUUAUUAGUCACCAGCUUGCUUAAAAGGAAGCAUUUGUUCAAAUCUUUAAUCGAGAGCAAAACGCAAUGCUUUUAUUAAGGCAAGUGAUUGUUCCCCA
.........((((......))))..(((((....((((((((.((..((((((((((((....((((.....))))....)))).))))))))..)).)))))))))))))....... ( -26.10)
>DroSim_CAF1 31000 118 + 1
UAUAAAAUAAAACUAUUGUGUUUAUUAGUCACAAGCUUGCUUAAAAGGAAGCAUUUGUUCAAAUCUUUAAUCGAGAGCAAAACGCAAUGCUUUUAUUAAGGCAAGUGAUUGUUCCCCA
.....(((((.....(((((.........)))))((((((((.((..((((((((((((....((((.....))))....)))).))))))))..)).))))))))..)))))..... ( -27.00)
>DroEre_CAF1 31715 118 + 1
UAAAUAAUACAACUAUUGUGUACGUUUGCCAUUCGCUUGCCUAAAAGGAAGCACUUGUUCAAAACUUUAAUCGAGAGCAAGACGCAGUGCUUUUAUUAAGGGAAGUGAUUGUUCCCCG
......(((((.....)))))........((.((((((.(((.((..((((((((((((.....((((.....))))...)))).))))))))..)).))).)))))).))....... ( -29.10)
>DroYak_CAF1 30376 118 + 1
UAUAUAAUAAAACUCUUGUGUUCAUUAGUCACAAGCUCGCUUAAAAGGCAGCACUUGUUCAACACUUAAAUCGAAAGCAAAACGAAAUUCUGUUAUUAAGGGAAGUGAUUGUUCCACA
................((((.....(((((((..(((.(((.....)))))).....(((....(((((..(....)...((((......)))).))))).))))))))))...)))) ( -20.10)
>consensus
UAUAUAAUAAAACUAUUGUGUUUAUUAGUCACAAGCUUGCUUAAAAGGAAGCAUUUGUUCAAAUCUUUAAUCGAGAGCAAAACGCAAUGCUUUUAUUAAGGCAAGUGAUUGUUCCCCA
..................................((((((((.((..((((((((((((....((((.....))))....)))).))))))))..)).))))))))............ (-19.22 = -19.94 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:24 2006