Locus 86

Sequence ID 2L_DroMel_CAF1
Location 301,051 – 301,153
Length 102
Max. P 0.604650
window129

overview

Window 9

Location 301,051 – 301,153
Length 102
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 86.15
Mean single sequence MFE -27.16
Consensus MFE -17.72
Energy contribution -17.03
Covariance contribution -0.69
Combinations/Pair 1.17
Mean z-score -1.79
Structure conservation index 0.65
SVM decision value 0.14
SVM RNA-class probability 0.604650
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 301051 102 - 22407834
CUAUCUUUAGCGAGGUGCUAACCUUAUCUAGAGGCCUC--------CUUGCCUCCUACCAGUUGG-------CACUUCCCCAAGCUGUCACUUGUGCUGAAACACUCUGGGUGAUUC
.....(((((((((((((((((........(((((...--------...)))))......)))))-------))))))..((((......)))).)))))).(((.....))).... ( -32.84)
>DroSim_CAF1 5695 102 - 1
CUAUCUUUAGCGAGGUGCUAACCUUAUCUAGAGGCCUC--------CUUGCCUCCUUCCACUUGG-------CACUUCCCCAAGCUGUCAUUUGUGCUGAAACACUCUGGGUGAUAC
.....((((((((((((((((.........(((((...--------...))))).......))))-------)))))).....((........)))))))).(((.....))).... ( -27.49)
>DroEre_CAF1 5492 102 - 1
CUAUCUUUAGCGGGGCGCUAACCUUAUCUAGAGGCCUC--------CUUGCCUCCUCCCACUUGC-------CACUUCCCCAAGCUGUCACCCGCGCUGAAACACUCUAGGUGAUAC
.....((((((((((.(.............(((((...--------...)))))....((((((.-------........)))).)).).))).))))))).(((.....))).... ( -24.40)
>DroYak_CAF1 5660 117 - 1
CUAUCUUUAGCGAGGCGCUAACCUUAUCUAGAGGCCUCCCUGCCUCCUUGCCUCCGCCCACUUGCCGCUUCCCACUUCCCCAAGCUGUCACUCGCGCCGAAACACUCUAGGUGAUAC
.(((((..((.(.(((((............(((((......))))).................((.((((...........)))).)).....)))))....).))..))))).... ( -23.90)
>consensus
CUAUCUUUAGCGAGGCGCUAACCUUAUCUAGAGGCCUC________CUUGCCUCCUCCCACUUGC_______CACUUCCCCAAGCUGUCACUCGCGCUGAAACACUCUAGGUGAUAC
.(((((..((.(.(((((............(((((..............)))))....((((((................)))).))......)))))....).))..))))).... (-17.72 = -17.03 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:21 2006