| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,441,472 – 2,441,571 |
| Length | 99 |
| Max. P | 0.936300 |
| Location | 2,441,472 – 2,441,571 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 76.67 |
| Mean single sequence MFE | -34.23 |
| Consensus MFE | -19.77 |
| Energy contribution | -21.47 |
| Covariance contribution | 1.70 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.936300 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2441472 99 + 22407834 A-UAUCCGACGGAUUGAACAGCUGUUGAACUAUGGCCAGUCAGGCGUGUG-------GAUGUGAUCUUUAAAGUUCAAAGGGCAUUGGCUGUGAUGCCGUUGGAUAC- .-((((((((((.....((((((..((..((...(((.....)))...((-------(((...(....)...))))).))..))..))))))....)))))))))).- ( -35.00) >DroPse_CAF1 22585 103 + 1 AGCAGUCGACGG---CAGCAGCUGUUGAACUAUUGCCAUUCGAGCAUGUGCUCUGAAAAGGUGAUCGC-AGAGGUCAAAGGGCAACCAAU-UGACGCCAUUCGUAACG .(((((((((((---(....))))))).)))((..((.(((((((....)))).)))..))..)).))-....(((((.((....))..)-))))............. ( -33.40) >DroSec_CAF1 20715 99 + 1 C-GAUCCGACGGAUCGAACAGCUGUUGAACUAUGGCCAGUCAGGCGUGUG-------GAUGUGAUCUUUAAAGUUCAAAGGGCAUUGGCUGUGACGCCGUUGGAUAC- .-.(((((((((.....((((((..((..((...(((.....)))...((-------(((...(....)...))))).))..))..))))))....)))))))))..- ( -34.00) >DroSim_CAF1 20742 98 + 1 A-GAUCCGACGGAUCGAACAGCUGUUGAACUAUGGCCAGUCAGGCAUGAG-------GAUGUGAUCUUUAAAGUUCAAAGGGCAUUGGCUGUGACGCCGUUGUAUA-- .-....((((((.....((((((..((..((.(((((.....))).((((-------(((...))))))).....)).))..))..))))))....))))))....-- ( -30.60) >DroEre_CAF1 22418 98 + 1 A-UAUCCGACGGAUCGAACAGCUGUUGAACUAUCGCCAUUCAGGCGUGUG-------CCUGUGAUCUCUAAAGUUCAAAGGGCAUUGGCUGUGACGCCGUUGGGUA-- .-((((((((((.....((((((..........((((.....)))).(((-------(((.(((.((....)).)))..)))))).))))))....))))))))))-- ( -39.00) >DroPer_CAF1 22665 103 + 1 AGCAGUCGACGG---CAGCAGCUGUUGAACUAUUGCCAUUCGAGCAUGUGCUCUGAAAAGGUGAUCGC-AGAGGUCAAAGGGCAACCAAU-UGACGCCAUUCGUAACG .(((((((((((---(....))))))).)))((..((.(((((((....)))).)))..))..)).))-....(((((.((....))..)-))))............. ( -33.40) >consensus A_CAUCCGACGGAUCGAACAGCUGUUGAACUAUGGCCAGUCAGGCAUGUG_______GAUGUGAUCUCUAAAGUUCAAAGGGCAUUGGCUGUGACGCCGUUGGAUAC_ ...(((((((((.....(((((((.((..((...(((.....)))................(((.(......).))).))..)).)))))))....)))))))))... (-19.77 = -21.47 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:17 2006