Locus 855

Sequence ID 2L_DroMel_CAF1
Location 2,440,648 – 2,440,761
Length 113
Max. P 0.565355
window1390

overview

Window 0

Location 2,440,648 – 2,440,761
Length 113
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 79.92
Mean single sequence MFE -26.85
Consensus MFE -18.57
Energy contribution -19.23
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.22
Structure conservation index 0.69
SVM decision value 0.06
SVM RNA-class probability 0.565355
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2440648 113 - 22407834
CGGCGUGU-AGCACACUUAAUAUUUAUUGUUUAUUUACACAAGCGCAUUAAUCGCAAAGCGCAAACGCGCCAAAAACGAGCAGCGCAAUUCACCGUAAAGGCCCCGUCG--ACUGC
.(((((((-.................((((........))))((((............))))..)))))))........((((((.......((.....))......))--.)))) ( -25.72)
>DroVir_CAF1 28876 111 - 1
UGGCGUGU-AGCGCACUUAAUAUUUAUUGUUUAUUUACACAAGCGCAUUAAUCGCAAAGCGCAAACGCGCCAAAAACGAGCCGCGCAAUUGCCAAU--GGGCCCCCGGG--CCCGU
((((((((-((......((((....)))).....))))))..((((.....(((....((((....))))......)))...))))....))))((--(((((....))--))))) ( -38.50)
>DroPse_CAF1 21916 91 - 1
CGGCGUGG-AGCGCACUUAAUAUUUAUUGUUUAUUUACACAAGCGCAUUAAUCGCAAAGCGCAAACGCGCCAAAAACGAGCAGCGAUAUUCC------------------------
.((((((.-.((((............((((........))))(((.......)))...))))...)))))).....................------------------------ ( -22.90)
>DroMoj_CAF1 30147 114 - 1
UGGCGUAUUCGCGCACUUAAUAUUUAUUGUUUAUUUACACAAGCGCAUUAAUCGCAAAGCGCAAACGCGCCAAAAAAGAUUCGCGCAAUUGCCAAU--GCGCCGCGUAGCUCCCGA
.((((((((.((..............((((........))))((((...((((.....((((....)))).......)))).))))....)).)))--)))))............. ( -30.60)
>DroAna_CAF1 24667 113 - 1
CGGCAUGU-AGCGCACUUAAUAUUUAUUGUUUAUUUACACAAGCGCAUUAAUCGCAAAGAGCAAACGCGCCAAAAACGAGCAACGCAAUUCGCCGUAAAGGCCCCGGCA--CCCGC
((((..((-.(((..(((........((((........))))((((.....((.....))......)))).......)))...))).))..)))).....((....)).--..... ( -20.50)
>DroPer_CAF1 22002 91 - 1
CGGCGUGG-AGCGCACUUAAUAUUUAUUGUUUAUUUACACAAGCGCAUUAAUCGCAAAGCGCAAACGCGCCAAAAACGAGCAGCGAUAUUCC------------------------
.((((((.-.((((............((((........))))(((.......)))...))))...)))))).....................------------------------ ( -22.90)
>consensus
CGGCGUGU_AGCGCACUUAAUAUUUAUUGUUUAUUUACACAAGCGCAUUAAUCGCAAAGCGCAAACGCGCCAAAAACGAGCAGCGCAAUUCCC__U___GGCCCCG__G__CCCG_
.((((((...((((............((((........))))(((.......)))...))))...))))))............................................. (-18.57 = -19.23 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:16 2006