| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,430,178 – 2,430,276 |
| Length | 98 |
| Max. P | 0.771665 |
| Location | 2,430,178 – 2,430,276 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 95.55 |
| Mean single sequence MFE | -17.06 |
| Consensus MFE | -16.36 |
| Energy contribution | -15.88 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2430178 98 + 22407834 GCAAUAUAAUGAGAUAUAGCUACACAGAU--AUAGCAACAGCUGACGAUGAGACCAUGAAGGUCUACCACUUUCGGAAAUUCGACGAAAAUGAAAUAAAA ((.((((......)))).))....((...--.((((....))))....))(((((.....)))))..((.(((((.........))))).))........ ( -16.60) >DroSec_CAF1 9450 98 + 1 GCAAUAUAAUAAGAUAUAGCUACACCGAU--AUAGCAACAGCUGACGAAGAGACCAUGAAGGUCUACCACUUUCGGAAAUUCGACGAAAAUGAAAUAAAA ((.((((......)))).))....((((.--.((((....))))......(((((.....))))).......))))........................ ( -17.10) >DroSim_CAF1 9626 98 + 1 GCAAUAUAAUGAGAUAUAGCUACACCGAU--AUAGCAACAGCUGACGAAGAGACCAUGAAGGUCUACCACUUUCGGAAAUUCGACGAAAAUGAAAUAAAA ((.((((......)))).))....((((.--.((((....))))......(((((.....))))).......))))........................ ( -17.10) >DroEre_CAF1 9643 98 + 1 GCAAUAUAAUGAGAUAUAGCUACACAGAU--ACGGCAACAGCUGAUGAAGAGACCAUGAAGGUCUACCACUUUCGGAAAUUCGACGAAAAUGAAAUAAAA ((.((((......)))).)).........--.((((....))))......(((((.....)))))..((.(((((.........))))).))........ ( -17.50) >DroYak_CAF1 9955 100 + 1 GCAAUAUAAUAAGAUAUAGUCACACAGAUGUAUAGCAACAGCUGACGAAGAGACCAUGAAGGUCUACCACUUUCGGAAAUUCGACGAAAAUGAAAUAAAA ..................(((...(((.(((......))).))).((((((((((.....))))).....))))).......)))............... ( -17.00) >consensus GCAAUAUAAUGAGAUAUAGCUACACAGAU__AUAGCAACAGCUGACGAAGAGACCAUGAAGGUCUACCACUUUCGGAAAUUCGACGAAAAUGAAAUAAAA ((.((((......)))).))............((((....))))......(((((.....)))))..((.(((((.........))))).))........ (-16.36 = -15.88 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:13 2006