Locus 85

Sequence ID 2L_DroMel_CAF1
Location 299,877 – 299,973
Length 96
Max. P 0.633833
window128

overview

Window 8

Location 299,877 – 299,973
Length 96
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 78.81
Mean single sequence MFE -26.58
Consensus MFE -16.26
Energy contribution -16.18
Covariance contribution -0.08
Combinations/Pair 1.17
Mean z-score -1.73
Structure conservation index 0.61
SVM decision value 0.21
SVM RNA-class probability 0.633833
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 299877 96 - 22407834
-------------UUGCAUUACUAUUGAUAGCUAAAAGUAGUUGCAAGGACUUCAAAUCGGGACUUACUCAAUGUACUUGUCCUUGCGCAACUGCAGUAUCUGUAAUUC
-------------((((((((((.(((.....))).)))))).((((((((.....((.(((.....))).))......)))))))))))).(((((...))))).... ( -24.00)
>DroSec_CAF1 4523 109 - 1
UUGCAUGGUUUAAAUGCAUUACUAUUGAUAGCUAAGAGUAGUUGGAAAGACUUCAAGUCGGGACUUACUCAAUGUACUUGUCCUUGCGCAACUGCAAUAUCUGUAGUUC
.(((((.......)))))..(((((.((((.......((((((((((....)))..((.(((((.(((.....)))...))))).)).)))))))..)))).))))).. ( -28.00)
>DroSim_CAF1 4536 109 - 1
UUGCAUGGUUUAAAUGCAUUACUAUUGAUAGCUAGGAGUAGUUGGAAAGACUUCAAGUUGGGACUUACUCAAUGUACUUGUCCUUGCGCAACUGCAAUAUCUGUAGUUC
.(((((.......)))))..(((((.((((.......((((((((((....)))..((.(((((.(((.....)))...))))).)).)))))))..)))).))))).. ( -28.00)
>DroEre_CAF1 4594 96 - 1
UUGCGUUUUUUAAAGGCAUUACUAUUGCUACUUAAGCAUAGGUGGAGA-------------GACUUACUCAAUGUACUUGUCCUUGCGCAACUGCAGUAUCUGCAGUUC
.(((((......((((((((.......(((((((....))))))).((-------------(.....)))))))).)))......)))))(((((((...))))))).. ( -27.20)
>DroYak_CAF1 4434 109 - 1
UUACAUUAUUCAAAGGCACUACGUUUGCUGCUUAAGAAUAGUUGGAAAAACUUGAAAUGGGGACUUACUCAAUGUACUUGUCCUUGCGCAACUGCAGUAUCUGCAGUUC
...((((((((..((((((.......).)))))..)))))).))..............((((((.(((.....)))...))))))....((((((((...)))))))). ( -25.70)
>consensus
UUGCAUGGUUUAAAUGCAUUACUAUUGAUAGCUAAGAGUAGUUGGAAAGACUUCAAAUCGGGACUUACUCAAUGUACUUGUCCUUGCGCAACUGCAGUAUCUGUAGUUC
...............(((..........((((((....))))))...............(((((.(((.....)))...))))))))..(((((((.....))))))). (-16.26 = -16.18 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:20 2006