Locus 848

Sequence ID 2L_DroMel_CAF1
Location 2,413,364 – 2,413,471
Length 107
Max. P 0.788098
window1375

overview

Window 5

Location 2,413,364 – 2,413,471
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 84.28
Mean single sequence MFE -24.51
Consensus MFE -19.29
Energy contribution -20.62
Covariance contribution 1.33
Combinations/Pair 1.12
Mean z-score -1.81
Structure conservation index 0.79
SVM decision value 0.58
SVM RNA-class probability 0.788098
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2413364 107 + 22407834
UCCUUUUCUUUCUGUGUAACCAUAUCAGUGCCCACCCGCACUCCACUCUGCUCCCCACUUAGCGGUGGGUUGUGGUCGCGGUCAUGCCUCAAUUGUCUUGAGCUUUU
...........(((((..((((((..(((((......)))))...........((((((....)))))).)))))))))))....((.((((.....)))))).... ( -27.10)
>DroSec_CAF1 2164 107 + 1
UCCUUUUCUUUCCCUGUAACCAUAUCAGUGCCCACCCGCACUCCACUCUGCUCCCCACUUAGCGGUGGGCUGUGGUCGCGGUCAUGCCUCAAUUGUGUUGAGCUUUU
.............(((..((((((.....(((((((.((......................)))))))))))))))..)))....((.(((((...))))))).... ( -28.65)
>DroSim_CAF1 1844 107 + 1
UCCUUUUCUUUCUCUGUAACCAUAUCAGUGCCCACCCGCACUCCACUCUGCUCCCCACUUAGCGGUGGGUUGUGGUCGCGGUCAUGCCUCAAUUGUCUUGAGCUUUU
.............(((..((((((..(((((......)))))...........((((((....)))))).))))))..)))....((.((((.....)))))).... ( -28.00)
>DroEre_CAF1 2025 106 + 1
UCCUUUUCUUUCUCUGUAGCCAUAUCAGCUUCCACCCGCACUCCAC-CUUCUCCCCACUUAGCAAUGGGCUGUGGUCGCGGUCAUGCCUCAAUUGUCUUGAGCUUUU
.............(((..((((((...((........)).......-......((((........)))).))))))..)))....((.((((.....)))))).... ( -19.60)
>DroYak_CAF1 2090 81 + 1
UCCUUUUCUUUCUCUGUAACC--------------------------CUACUGCCCACUUAGCAAUGGGCACUGGUCGCGGUCAUGCCUCAAUUGUCUUGAGCUUUU
.............(((..(((--------------------------....((((((........))))))..)))..)))....((.((((.....)))))).... ( -19.20)
>consensus
UCCUUUUCUUUCUCUGUAACCAUAUCAGUGCCCACCCGCACUCCACUCUGCUCCCCACUUAGCGGUGGGCUGUGGUCGCGGUCAUGCCUCAAUUGUCUUGAGCUUUU
.............(((..((((((..(((((......)))))...........((((((....)))))).))))))..)))....((.((((.....)))))).... (-19.29 = -20.62 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:01 2006