| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,406,163 – 2,406,279 |
| Length | 116 |
| Max. P | 0.804660 |
| Location | 2,406,163 – 2,406,279 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 78.46 |
| Mean single sequence MFE | -31.63 |
| Consensus MFE | -25.90 |
| Energy contribution | -25.57 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.804660 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2406163 116 + 22407834 ACUUAUUUAAAUAAUCCAUUUAUUUAAACAUAAUCUCUUUUAGGGCGUUACCUAUCCAGCUUGCCAUGGUAUCUGGCGUUUCUGGGCGCCGCCCAUGGAGCGCUCCCGACUGGCGA .....(((((((((.....)))))))))............((((......))))......((((((..((....(((((((((((((...))))).))))))))....)))))))) ( -33.90) >DroSec_CAF1 23973 103 + 1 -------------AUCAAUUUAUUUCAACAUAAUCUUUCUUAGGGCGUCACCUAUCCAGCUUGCCACGGUAUCUGGCGUUUCUGGGCGCCGCCCAUGGAGCGCUCCCGACUGGCGA -------------...........................((((......))))......(((((((((.....(((((((((((((...))))).)))))))).)))..)))))) ( -31.30) >DroSim_CAF1 24741 103 + 1 -------------AUCCAUUUAUUUCAACAAAAUCUUUCUUAGGGCGUUACCUAUCCAGCUUGCCAUGGUAUCUGGCGUUUCUGGGCGCCGCCCAUGGAGCGUUCCCGACUGGCGA -------------...........................((((......))))......((((((..((....(((((((((((((...))))).))))))))....)))))))) ( -27.40) >DroEre_CAF1 25273 112 + 1 ACUCAUUGGAAUAAUCCAUAUCCUUCACC---A-CAUCCCUAGGGCGUUACCUAUCCAGCUUGCCAUGGUAUCUGGCGCUUCUGGGCGCCGCCCAUGGAACGCUCCCGACUGGCGA ......((((....))))......((.((---(-......((((......))))...(((...((((((....(((((((....))))))).))))))...)))......))).)) ( -33.50) >DroYak_CAF1 26254 113 + 1 ACUUAUUGGAAUAAUCCAUAUAUUCCACA---AUCUUCCUUAGGGCGUUACCUAUCCAGCCUGCCAUGGCAUCUGGCGCUUCUGGGCGCCGCCCAUGGAGCGCUCCCGACUGGCGA ......(((((((.......)))))))..---........((((......))))....((((((....)))...(((((((((((((...))))).)))))))).......))).. ( -38.60) >DroAna_CAF1 30290 101 + 1 ACUAUUU--AAAAACCCGUUU-------------CUAUUAAAGGGCGUUACGUAUCCGGCUUGCCAUGGCAUCUGGCGCUUCUGGGCACCGCCCAUGGAACGUUCCCGACUAGCCA .......--.......((((.-------------((((....(((((....((..((((..(((((.......)))))...))))..))))))))))))))).............. ( -25.10) >consensus ACU_AUU__AAUAAUCCAUUUAUUUCAAC___AUCUUUCUUAGGGCGUUACCUAUCCAGCUUGCCAUGGUAUCUGGCGCUUCUGGGCGCCGCCCAUGGAGCGCUCCCGACUGGCGA ..........................................(((...........(((..(((....))).)))((((((((((((...))))).))))))).)))......... (-25.90 = -25.57 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:58 2006