| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,403,882 – 2,403,984 |
| Length | 102 |
| Max. P | 0.702945 |
| Location | 2,403,882 – 2,403,984 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.41 |
| Mean single sequence MFE | -33.70 |
| Consensus MFE | -21.94 |
| Energy contribution | -23.81 |
| Covariance contribution | 1.86 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.702945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2403882 102 - 22407834 CCUCGUCUGGUCACGCAGGACCUCCUGAAUAAGAGC---GAAAAAAAGGAGCUGAGGGAACGACUU----GCGUCCUUCGAGCAACUUGCGCCUUGACCGACUUUAAGG--- ....(((.((((...((((....))))...(((.((---(.....(((..(((((((((.((....----.)))))))).)))..))).))))))))))))).......--- ( -35.60) >DroSec_CAF1 21804 101 - 1 CCUCGUCUGGUCACGCAGGACCUCCUGAAUAAGAGC---A-AAAAAAGGAGCUGAGGGAACGACUU----GCGUCCUUCGAGCAACUUGCGCCUUGACCGACUUUAAGG--- ....(((.(((((((((((...((((..........---.-.....))))(((((((((.((....----.)))))))).)))..))))))...)))))))).......--- ( -34.19) >DroSim_CAF1 22595 101 - 1 CCUCGUCUGGUCACGCAGGACCUCCUGAAUAAGAGC---A-AAAAAAGGAGCUGAGGGAACGACUU----GCGUCCUUCGAGCAACUUGCGCCUUGACCGACUUUAAGG--- ....(((.(((((((((((...((((..........---.-.....))))(((((((((.((....----.)))))))).)))..))))))...)))))))).......--- ( -34.19) >DroEre_CAF1 22992 88 - 1 CCUCGUCUGGUCACGCAGGACCUCCUGAAUAAGAGC---A-AAAAAAGGAGCUG-----------------CGUCCUUCGCACAACUUGCGCCUUGACCGACUUUAAGG--- ....(((.(((((((((((..(((((..........---.-.....))))).((-----------------((.....))))...))))))...)))))))).......--- ( -27.49) >DroYak_CAF1 23947 108 - 1 CCUCGUCUGGUCACGCAGGACCUCCUGAAUAAGAGCGCAA-AAAAAAGGAGCUGAGGGAACGACUUAUGUACGUCCUUCGAGCAACUUGCGCCUUGACCGACUUUAAGG--- ....(((.((((...((((....))))...(((.(((((.-.....((..(((((((((.((((....)).)))))))).)))..))))))))))))))))).......--- ( -38.80) >DroPer_CAF1 33018 92 - 1 CCUCGUCUGGUCACGCAGGACCGG-----GAAGCCCGCCC-CACAGAGAGGCCGAGA--------------AGUCCUUCCGAUGUCUUGUGCGUUGACCGACUUUAAGGAAG (((.(((.(((((((((((..(((-----(...))))..)-)...((((.(.((.((--------------(....))))).).)))).)))).))))))))....)))... ( -31.90) >consensus CCUCGUCUGGUCACGCAGGACCUCCUGAAUAAGAGC___A_AAAAAAGGAGCUGAGGGAACGACUU____GCGUCCUUCGAGCAACUUGCGCCUUGACCGACUUUAAGG___ (((.(((.(((((((((((..(((((....................)))))..((((((..............))))))......))))))...))))))))....)))... (-21.94 = -23.81 + 1.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:55 2006