| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,397,068 – 2,397,172 |
| Length | 104 |
| Max. P | 0.761984 |
| Location | 2,397,068 – 2,397,172 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 77.47 |
| Mean single sequence MFE | -30.45 |
| Consensus MFE | -16.81 |
| Energy contribution | -17.17 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2397068 104 - 22407834 GGCGGUAUACCGGAAGCAAAUGCUUUUGUCGCCCGGCGUGUGCCGCUUUCUGUUGUUGCGUUC-------GUUUUUUGAGUUUUACCCUCAAAAUGCAUGAGUUUGCUCAU ((((((((((.((((((....))))))(((....)))))))))))))................-------((.(((((((.......))))))).))(((((....))))) ( -33.70) >DroPse_CAF1 22920 102 - 1 G---GCAUACCGGAAGCAAAUGCUUUUGUCGCCCGGCGUGUGUCGAGCAUUGUUACUGCUUUCCAGUGCUGUUUUUUGUGUUUUACCCUCAAAAUGCAUAAAU------AU (---((((((.((((((....))))))(((....)))))))))).(((((((..(.....)..)))))))((((..((((((((......)))))))).))))------.. ( -27.00) >DroEre_CAF1 16159 104 - 1 GGCGGUACACCGGAAGCAAAUGCUUUUGUCGCCCGGCGUGUGCCGCUUUCUGUUGUUGCGUUC-------GUUUUUUGAGUUUUACCCUCAAAAUGCAUGGGUUUACUCAU ((((((((((.((((((....))))))(((....)))))))))))))................-------......(((((...((((...........))))..))))). ( -35.30) >DroYak_CAF1 15954 104 - 1 GGCGGUAUAACGGAAGCAAAUGCUUUUGUCGCCCGGCGUGUGCCGCUUUCUGUUGUGGCGUUC-------GUUUUUUGAGUUUUACCCUCAAAACGCAGGGGUUUACUCAU ((((.....((((((((....)))))))))))).((((..((((((........))))))..)-------)))...(((((...(((((.........)))))..))))). ( -38.10) >DroAna_CAF1 18263 80 - 1 GGCGGCAUACCGGAAGCAAAUGCUUUUGUCGCCAGGCGUGUGUCG-------------------------GUUUUUUGUGUUUUACCCUCAAAAUGCAUAAAU------AU ..((((((((.((((((....))))))(((....)))))))))))-------------------------((((..((((((((......)))))))).))))------.. ( -22.70) >DroPer_CAF1 24183 102 - 1 G---GCAUACCGGAAGCAAAUACUUUUGUCGCCCGGCGUGUGUCGAGCAUUGUUACUGCUUUCCAGUGCUGUUUUUUGUGUUUUACCCUCAAAAUGCAUAAAU------AU (---(((((((((..(((((....)))))...))))..)))))).(((((((..(.....)..)))))))((((..((((((((......)))))))).))))------.. ( -25.90) >consensus GGCGGCAUACCGGAAGCAAAUGCUUUUGUCGCCCGGCGUGUGCCGCUUUCUGUUGUUGCGUUC_______GUUUUUUGAGUUUUACCCUCAAAAUGCAUAAAU______AU ..((((((((.((((((....))))))(((....))))))))))).........................((.(((((...........))))).)).............. (-16.81 = -17.17 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:52 2006