Locus 840

Sequence ID 2L_DroMel_CAF1
Location 2,394,216 – 2,394,306
Length 90
Max. P 0.535615
window1364

overview

Window 4

Location 2,394,216 – 2,394,306
Length 90
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 83.78
Mean single sequence MFE -15.95
Consensus MFE -10.81
Energy contribution -11.00
Covariance contribution 0.19
Combinations/Pair 1.06
Mean z-score -2.01
Structure conservation index 0.68
SVM decision value 0.00
SVM RNA-class probability 0.535615
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2394216 90 - 22407834
UAAAAAUGCCCCCCAAAUGGGCAAUGAACCACC-GA-------AAACACACAACUACCCACACAUUUGGUCAACGAAAACAAUCAGGCAAAUGGUGUG
......(((((.......)))))..........-..-------...............(((((.....(((..............))).....))))) ( -14.84)
>DroSec_CAF1 12255 77 - 1
UAAAAAUGCC--CCAAAUGGGCAAUGAACCCCCCGA-------AAACA------------CACAUUUGGUCAACGAAAACAAUCAGGCAAAUGGUGUG
......((((--(.....))))).............-------..(((------------(.((((((.((..............)))))))))))). ( -16.34)
>DroSim_CAF1 12970 77 - 1
UAAAAAUGCC--CCAAAUGGGCAAUGAACCCCCAGA-------AAACA------------CACAUUUGGUCAACGAAAACAAUCAGGCAAAUGGUGUG
......((((--(.....))))).............-------..(((------------(.((((((.((..............)))))))))))). ( -16.34)
>DroEre_CAF1 13375 87 - 1
UAAAAAUGCCC-CCAAACGGGCAAUGAACCCCCAA--------AAAC--ACAUCUACCCACACAUUUGGUCAAGGAAAACAAUCAGGCAAAUGGUGUG
......(((((-......)))))............--------....--.........(((((.....(((...((......)).))).....))))) ( -16.50)
>DroYak_CAF1 13157 95 - 1
UAAAAAUGUCC-CCAAAUGGGCAAUGAACCCCCAAAACAAAAAAAAC--ACAUCUACCCACACAUUUGGUCAAGGAAAACAAUCAGGCAAAUGGUGUG
......(((((-......)))))........................--.........(((((.....(((...((......)).))).....))))) ( -13.70)
>DroAna_CAF1 14741 76 - 1
UAAAAAUGCCC-CCAAAUGGGCAAUGAACCCC--AA-------AAACA------------CACAUUUGGUCAAUGAAAACAAUCAGGCAAAUGGUGUG
......(((((-......))))).........--..-------..(((------------(.((((((.((..(((......))))))))))))))). ( -18.00)
>consensus
UAAAAAUGCCC_CCAAAUGGGCAAUGAACCCCCAAA_______AAACA____________CACAUUUGGUCAACGAAAACAAUCAGGCAAAUGGUGUG
......(((((.......))))).....................................((((((..(((...((......)).)))....)))))) (-10.81 = -11.00 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:51 2006