Locus 839

Sequence ID 2L_DroMel_CAF1
Location 2,391,581 – 2,391,672
Length 91
Max. P 0.506419
window1363

overview

Window 3

Location 2,391,581 – 2,391,672
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 89.16
Mean single sequence MFE -28.20
Consensus MFE -24.72
Energy contribution -24.77
Covariance contribution 0.06
Combinations/Pair 1.14
Mean z-score -1.33
Structure conservation index 0.88
SVM decision value -0.05
SVM RNA-class probability 0.506419
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2391581 91 + 22407834
CAUUUUCCGGACGGGGAGUCUAGAAAGCUUCGUUUCUGCGGCGGCAGCUAUAAAAACCCCGGCCCAAUGACUGGCGCCACACACAAACCAC
........((..((((..(.((...(((((((((.....))))).)))).)).)..))))((((((.....))).))).........)).. ( -24.90)
>DroSec_CAF1 9599 91 + 1
CAUUUUCCGGACGGGGAGUCUAGAAAGCUUCUUUUCUGCGGCGGCAGCUAUAAAAACCCCGGCCCAGUGACUGGCGCCACACACAAACCAC
........((..((((....(((((((....))))))).(((....))).......))))(((((((...)))).))).........)).. ( -26.40)
>DroSim_CAF1 10290 91 + 1
CAUUUUCCGGACGGGGAGUCUAGAAAGCUUCGUUUCUGCGGCGGCAGCUAUAAAAACCCCGGCCCAGUGGCUGGCGCCACACACAAACCAC
..(((((..(((.....)))..)))))....((((.((.((((.(((((((.....(....)....))))))).)))).))...))))... ( -28.30)
>DroEre_CAF1 10702 91 + 1
CAUUUUCCGGACGGGGAGUCCAAAAAGCUUCGCCUUUGCGGCGGCAGCUAUAAAAACCCCGGCCCAGUGACUGGCGCCACACACAAACCAC
........((..((((.........(((((((((.....))))).)))).......))))(((((((...)))).))).........)).. ( -30.99)
>DroYak_CAF1 10361 91 + 1
CAUUUUCCGGGCGGGGAGUCCUGAAAGCUUCGCCUUUGCGGCGGCAGCUAUAAAAACCCCGGCCCAGUGACUGGCGCCACACACAAACCAC
........((((.(((.((......(((((((((.....))))).))))......))))).)))).(((..((....))..)))....... ( -32.30)
>DroAna_CAF1 11647 80 + 1
CAUUU--CGGACG---------GAAAGCUCCGUCCGUGCGGCGGCAGCUAUAAAAACCCCGGCCCAGUCAGUGGCGCCAAACACAAACCAU
.....--.(((((---------((....)))))))(((.(((....)))...........((((((.....))).)))...)))....... ( -26.30)
>consensus
CAUUUUCCGGACGGGGAGUCUAGAAAGCUUCGUCUCUGCGGCGGCAGCUAUAAAAACCCCGGCCCAGUGACUGGCGCCACACACAAACCAC
........((..((((.........(((((((((.....))))).)))).......))))((((((.....))).))).........)).. (-24.72 = -24.77 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:50 2006