Locus 837

Sequence ID 2L_DroMel_CAF1
Location 2,388,558 – 2,388,653
Length 95
Max. P 0.785772
window1360

overview

Window 0

Location 2,388,558 – 2,388,653
Length 95
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 87.66
Mean single sequence MFE -23.32
Consensus MFE -19.80
Energy contribution -20.30
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.85
SVM decision value 0.57
SVM RNA-class probability 0.785772
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2388558 95 - 22407834
CACAAAGUGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGU--GCGGCAACAACAACAAAAAAAAAUGAGGCAGAAGUGAUG
(((..((((.(((((.(((((....)).))).))))).))))(((...((((.(((--..(....).))).)))).........)))....)))... ( -23.30)
>DroSec_CAF1 6563 94 - 1
CACAAAGUGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGU--GCGGCAAGAAAAA-AGAAAAAAAUGUGGCAGAAAUGAGG
((((.((((.(((((.(((((....)).))).))))).))))((((((......))--.))))........-.........)))).((....))... ( -25.00)
>DroSim_CAF1 7237 94 - 1
CACAAAGUGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGU--GCGGCAAGAAAAA-AGAAAAAAAUGUGGCAGAAAUGAGG
((((.((((.(((((.(((((....)).))).))))).))))((((((......))--.))))........-.........)))).((....))... ( -25.00)
>DroEre_CAF1 7476 89 - 1
CACAAAGUGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGU--GCCGCAAAAA------AAAAAAAUGAGGCAAAAGUGAAG
..((.((((.(((((.(((((....)).))).))))).))))..)).(((..((.(--(((.((....------.......)).))))..))..))) ( -26.50)
>DroYak_CAF1 7333 91 - 1
CACAAAGUGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGU--GCGGCAAAAU----ACAAAAAAAUGAGGCAACAUUGAAG
..((.((((.(((((.(((((....)).))).))))).))))..))..((((((..--..))))))..----............(....)....... ( -22.10)
>DroAna_CAF1 8597 89 - 1
CACAAAGUGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUUCUGACUUUGCUCUGGGCCGCAACAAAA----AAAAAAAUAAAGUAAA----AAG
..(((((((.(((((.(((((....)).))).))))).))))).))...((((........)))).....----................----... ( -18.00)
>consensus
CACAAAGUGAAACCGAAACCGUUAACGUGUUGCGGUUACGCUGCUGACUUUGCUGU__GCGGCAAAAAAA__A_AAAAAAAUGAGGCAAAAAUGAAG
..((.((((.(((((.(((((....)).))).))))).))))..))...((((((....))))))................................ (-19.80 = -20.30 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:47 2006