Locus 836

Sequence ID 2L_DroMel_CAF1
Location 2,388,384 – 2,388,485
Length 101
Max. P 0.678565
window1359

overview

Window 9

Location 2,388,384 – 2,388,485
Length 101
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.79
Mean single sequence MFE -26.83
Consensus MFE -17.39
Energy contribution -16.76
Covariance contribution -0.64
Combinations/Pair 1.22
Mean z-score -2.27
Structure conservation index 0.65
SVM decision value 0.30
SVM RNA-class probability 0.678565
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2388384 101 - 22407834
CUCGGCU--UUUUAUUGCGAUUU--UUUCGCAAUGUU-UUC-GCUCUUUGUGUGAGUUUAUCAAGCUCCUUACAUUUGUUUUCCUGUAAAACGGGGGCAACU-------UCCCC------
...(((.--...((((((((...--..))))))))..-...-)))...((((.(((((.....)))))..))))...(((((.....)))))(((((.....-------)))))------ ( -24.40)
>DroPse_CAF1 12560 117 - 1
CUCGGAUUUUUUUAUUGCGAUUU--UUUCGCAAUGUUUUUG-GGUCUUUGUGUGAGUUUAUCAAACUCCUUACAUUUGUUUUCCUGCAAAAUGGGGGAAGUGCCGCCCUGCCUCGGCCGA
.((((.......((((((((...--..)))))))).....(-(((...((((.(((((.....)))))..)))).....((((((.(.....).))))))....))))........)))) ( -31.70)
>DroEre_CAF1 7303 100 - 1
CUCGGCU--UUUUAUUGCAAUUU--UUUCGCAAUGUU-UUC--GUCUUUGUGUGAGUUUAUCAAGCUCCUUACAUUUGUUUUCCUGUAAAACGGGGGCAACU-------UCCCU------
...(((.--...((((((.....--....))))))..-...--)))..((((.(((((.....)))))..))))...(((((((((.....)))))).))).-------.....------ ( -18.90)
>DroYak_CAF1 7159 101 - 1
CUCGGCU--UUUUAUUGCGAUUU--UUUCGCAAUGUU-UUC-GGUCUUUGUGUGAGUUUAUCAAGCUUCUUACAUUUGUUUUCCUGUAAAACGGGGGCAACU-------UCCCU------
...((((--...((((((((...--..))))))))..-...-))))...(((((((............)))))))..(((((((((.....)))))).))).-------.....------ ( -24.00)
>DroAna_CAF1 8420 107 - 1
CUCGGAUU-UUUUAUUGCGAUUUUUUUUCGCAAUGUU-UUGAGGCCUUUGUGUGAGUUUAUCAAACUCCUUACAUUUGUUUUCCUGCAAAACGGAGGCUGUUUU-----UUCCC------
((((((..-...((((((((.......)))))))).)-)))))((((((((..(((((.....)))))......(((((......)))))))))))))......-----.....------ ( -30.30)
>DroPer_CAF1 13808 116 - 1
CUCGGAUUUUUUUAUUGCGAUUU--UUUCGCAAUGUU-UUG-GGUCUUUGUGUGAGUUUAUCAAACUCCUUACAUUUGUUUUCCUGCAAAAUGGGGGAAGUGCCGCCCUGCCUCGGCCGA
.((((.......((((((((...--..))))))))..-..(-(((...((((.(((((.....)))))..)))).....((((((.(.....).))))))....))))........)))) ( -31.70)
>consensus
CUCGGAU__UUUUAUUGCGAUUU__UUUCGCAAUGUU_UUC_GGUCUUUGUGUGAGUUUAUCAAACUCCUUACAUUUGUUUUCCUGCAAAACGGGGGCAACU_______UCCCC______
...((.......((((((((.......)))))))).............((((.(((((.....)))))..))))........))........((((..............))))...... (-17.39 = -16.76 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:46 2006