Locus 834

Sequence ID 2L_DroMel_CAF1
Location 2,385,303 – 2,385,395
Length 92
Max. P 0.927919
window1353

overview

Window 3

Location 2,385,303 – 2,385,395
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 70.25
Mean single sequence MFE -29.92
Consensus MFE -16.46
Energy contribution -18.43
Covariance contribution 1.97
Combinations/Pair 1.24
Mean z-score -1.78
Structure conservation index 0.55
SVM decision value 1.19
SVM RNA-class probability 0.927919
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2385303 92 + 22407834
GGCUUGGGAUAACAACAGAUAGUCGACGGCUUGGAGCAGCAUGUACUCCAGGCCGAUGAAGAUGGAUAAGCCGAGCUGCUUCCGGAACUGCA
(((((((........((.....(((.((((((((((.........)))))))))).)))...))......)))))))((..........)). ( -30.34)
>DroPse_CAF1 8948 80 + 1
---------UAACUACAGUUGCUGGGAGGCCAAGAACAGCAGGU---CACGGCCGAGGUAGAUGGACAAACUAGACUUGGAACGGAGCCGCA
---------........(((..(((....)))..))).((.(((---..((..(.((((...(((.....))).)))).)..))..))))). ( -20.00)
>DroSec_CAF1 3301 89 + 1
GGCUUGGGACAACAACAGAUAGUCGACGGCUUGGAGCAGCAGGUGCUCCAGGCCGAUGAA---GGAUAAGCCGAGCUGCUUCCAGAACUGCA
((((((((((...........)))..((((((((((((.....)))))))))))).....---.......)))))))((..........)). ( -35.90)
>DroSim_CAF1 3958 89 + 1
GGCUUGGGACAACAACAGAUAGUCGACGGCUUGGAGCAGCAGGUGCUCCAGGCCGAUGAA---GGAUAAGCCGAGCUGCUUCCAGAACUGCA
((((((((((...........)))..((((((((((((.....)))))))))))).....---.......)))))))((..........)). ( -35.90)
>DroEre_CAF1 4210 74 + 1
GCCUUAGGAC---AACAGAUGGUCGACGGCGUGGAGUAGCAGGUAUUCCAAGCCGAAGAA---------------CUGCUUGCGGAAGUGCA
(((((..(.(---(((((....((..((((.(((((((.....))))))).))))..)).---------------))).))))..))).)). ( -25.50)
>DroYak_CAF1 4015 89 + 1
GUCUUGGGAC---AACAGAUAGUCGACGGCUUGGAGUAGCAGGAGUUCCAGGCCGAUGAACAGGGUUGAACCGAGCUGCUGGCGGAACUGCA
(.(((((..(---(((......(((.((((((((((.........)))))))))).))).....))))..)))))).....(((....))). ( -31.90)
>consensus
GGCUUGGGACAACAACAGAUAGUCGACGGCUUGGAGCAGCAGGUGCUCCAGGCCGAUGAA___GGAUAAGCCGAGCUGCUUCCGGAACUGCA
...............(((....(((.((((((((((((.....)))))))))))).)))................(((....)))..))).. (-16.46 = -18.43 +   1.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:40 2006