| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,382,871 – 2,382,981 |
| Length | 110 |
| Max. P | 0.545884 |
| Location | 2,382,871 – 2,382,981 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 83.88 |
| Mean single sequence MFE | -35.32 |
| Consensus MFE | -23.05 |
| Energy contribution | -23.00 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545884 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2382871 110 - 22407834 UGGAGGGAUUUUCUGAUGCCCGUCGGGGGAAUUCCUUGUGGGAAAGAAUUUCCUCGGCUGCUCCAUCGACAAGAUGCACAAAUUCCUUCACAUCAAAGCUAUAAUUGGUA (((((((((((...((.((..(((((((((((((.((......))))))))))))))).))))((((.....))))...))))))))))).......((((....)))). ( -35.10) >DroSec_CAF1 869 110 - 1 UGGAGGGAUUUUCUGAUGUCUGUCGAGGGAAUUUCUUGUGGGAAAGAAUUUCCUCGGCUGCUUCAUCGACAAGAUGCACAAAUUCCUUCACAUCAAAGCUAUAGUUGGUG (((((((((((..((..((..((((((((((((.(((......))))))))))))))).))..((((.....)))))).)))))))))))((((((........)))))) ( -36.40) >DroSim_CAF1 1539 110 - 1 UGGAGGGAUUUUCUGAUGUCUGUCGAGGGAAUUCCUUGUGGGAAAGAAUUUCCUCGGCUGCUUCAUCGACAAGAUGCACAAAUUCCUUCACAUCAAAGCUAUAGUUGGUG (((((((((((..((..((..(((((((((((((.((......))))))))))))))).))..((((.....)))))).)))))))))))((((((........)))))) ( -36.40) >DroEre_CAF1 1757 110 - 1 UGGAGGGAUUUUCUGAUGUCUUGCGAGGGAAUUCCUUGUGGGAUAGAAUUUCCUUGGCGGCUUCAUCGACGAGAUUCACAAAUUCCUUUACAUCAAAGCUAUAGUUGGUG (((((((((((.....(((((..(((((.....)))))..)))))(((((((.(((..(....)..))).)))))))..)))))))))))((((((........)))))) ( -35.90) >DroYak_CAF1 1560 110 - 1 UGGAGGGAUUUUCUGAUGUCUCGCGAGGGAACUCCUUGUGGGAAAGAAUUUCCUUGGCGGCUUUGUCGACGAGAUGCACAAAUUCCUUUACAUCAAAGCUAUAGUUGGUG ((((((((((((((....((((((((((.....)))))))))).)))(((((.((((((....)))))).)))))....)))))))))))((((((........)))))) ( -35.80) >DroAna_CAF1 1839 110 - 1 UAUGAGGAUUUUCAGGCUCUUCCUGAGGAUACUCCUUAUGUGUUCGUACAUCCUUGGCUGCUUCAGCAACGAGAUGGACGAACUCUUCGACAUCAAAGCUAUAGUUCGUA ((((((((((((((((.....))))))))...)))))))).((((((.((((.(((..(((....))).))))))).))))))........................... ( -32.30) >consensus UGGAGGGAUUUUCUGAUGUCUGUCGAGGGAAUUCCUUGUGGGAAAGAAUUUCCUCGGCUGCUUCAUCGACAAGAUGCACAAAUUCCUUCACAUCAAAGCUAUAGUUGGUG (((((((((((............(((((((((((...........))))))))))).......((((.....))))...)))))))))))((((((........)))))) (-23.05 = -23.00 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:36 2006