Locus 830

Sequence ID 2L_DroMel_CAF1
Location 2,381,130 – 2,381,228
Length 98
Max. P 0.793197
window1347

overview

Window 7

Location 2,381,130 – 2,381,228
Length 98
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 98.81
Mean single sequence MFE -30.90
Consensus MFE -29.30
Energy contribution -29.80
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.95
SVM decision value 0.59
SVM RNA-class probability 0.793197
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2381130 98 - 22407834
ACGGCCAGCGAUGAUGAUGAUCUCACCUGGCCUUAAGCGGCUAGAAGACGAUUAUGAGCGGGAUAAUGUUAUUGUCCAUGUUAAUUGUUCGCGAAAGA
...((.((((((....((((((((..((((((......))))))..)).)))))).(((((((((((...))))))).)))).)))))).))...... ( -29.10)
>DroSec_CAF1 5749 98 - 1
ACGGCCAGCGAUGAUGAUGAUCUCACCUGGCCUUAAGCGGCUAGAAGACGAUUAUGAGCGGGAUAAUUUUAUUGUCCAUGUUAAUUGUUCGCCAAAGA
..(((.((((((....((((((((..((((((......))))))..)).)))))).(((((((((((...))))))).)))).)))))).)))..... ( -32.70)
>DroSim_CAF1 2151 98 - 1
ACGGCCAGCGAUGAUGAUGAUCUCACCUGGCCUUAAGCGGCUAGAAGACGAUUAUGAGCGGGAUAAUGUUAUUGUCCAUGUUAAUUGUUCGCCAAAGA
..(((.((((((....((((((((..((((((......))))))..)).)))))).(((((((((((...))))))).)))).)))))).)))..... ( -32.70)
>DroYak_CAF1 2171 98 - 1
ACGGCCAGCGAUGAUGAUGAUCUCACCUGGCCUUAAGCGGCUAGAAGACGAUUAUGAGCGGGAUAAUGUUAUUGUCCAUGUUAAUUGUUCGCGAAAGA
...((.((((((....((((((((..((((((......))))))..)).)))))).(((((((((((...))))))).)))).)))))).))...... ( -29.10)
>consensus
ACGGCCAGCGAUGAUGAUGAUCUCACCUGGCCUUAAGCGGCUAGAAGACGAUUAUGAGCGGGAUAAUGUUAUUGUCCAUGUUAAUUGUUCGCCAAAGA
..(((.((((((....((((((((..((((((......))))))..)).)))))).(((((((((((...))))))).)))).)))))).)))..... (-29.30 = -29.80 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:34 2006