| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 293,082 – 293,174 |
| Length | 92 |
| Max. P | 0.602401 |
| Location | 293,082 – 293,174 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 81.07 |
| Mean single sequence MFE | -21.63 |
| Consensus MFE | -15.59 |
| Energy contribution | -15.93 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602401 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 293082 92 - 22407834 CGCAGAUGGCUUCACCAACUGAAAACGAUCAACAGCGUAAAUGAUGCUGUCAACUG--------UCUUAAGACGAAAUCUUA------------------AAAUCUUCAAAAAUGCGU (((((((((.((((.....))))........(((((((.....)))))))...)))--------))((((((.....)))))------------------)............)))). ( -18.20) >DroSec_CAF1 15094 118 - 1 CGCAGAUGGCUUCACCAACUGAAAACGAUCAACAGCGUAAAUGCCGCUGUCAACUAGGGAAUCUCCUUAAAACGAAAUCUUACAUCAAAGGUUACUACUUAAAUCAUCAAAAAUGCGU ((((((((..((((.....))))..((....((((((.......))))))....(((((.....)))))...))........))))..((((....)))).............)))). ( -22.60) >DroSim_CAF1 15083 118 - 1 CGCAGAUGGCUUCACCAACUGAAAACGAUCAGCAGCGUAAAUGCCGCUGUCAACUAGGGAAUCUCCUUAAAACGAAAUCUUACAUCAAAGAUUACUACUUAAAUCAUCAAAAAUGCGU ((((((((..((((.....))))...((.((((.(((....))).))))))...(((((.....))))).............))))...((((........))))........)))). ( -24.10) >consensus CGCAGAUGGCUUCACCAACUGAAAACGAUCAACAGCGUAAAUGCCGCUGUCAACUAGGGAAUCUCCUUAAAACGAAAUCUUACAUCAAAG_UUACUACUUAAAUCAUCAAAAAUGCGU ((((((((..((((.....))))..).))).((((((.......))))))....(((((.....)))))............................................)))). (-15.59 = -15.93 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:17 2006