Locus 829

Sequence ID 2L_DroMel_CAF1
Location 2,374,958 – 2,375,078
Length 120
Max. P 0.908726
window1346

overview

Window 6

Location 2,374,958 – 2,375,078
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 75.97
Mean single sequence MFE -43.12
Consensus MFE -20.64
Energy contribution -22.26
Covariance contribution 1.63
Combinations/Pair 1.40
Mean z-score -2.57
Structure conservation index 0.48
SVM decision value 1.06
SVM RNA-class probability 0.908726
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2374958 120 - 22407834
GUCCGGCGUUCUUUUCAAAAUCGCGGGGUUACCGGUAACUAUUCUAAGGAAAUUCACGGUUUCCAAGCCGUGGUUUUGAAAAGUUUGAUGGGCCCUUCGCCAGAUUUCAGGUGAGAAUAC
(((((.((..(((((((((((((((((((((....))))).......((((((.....))))))...))))))))))))))))..)).)))))..((((((........))))))..... ( -46.50)
>DroSec_CAF1 81773 120 - 1
GUCCGGCGUUCUUUUCAGAAUCGCGGGGUUACCGGUAACUAUUCUAAGGAAAUUCACUGUUUCCAAACCGUGGUUUUGAAAAGUUUGAUGGGCCCUUCGCCAGAUUUUAGGUGAGAAUAC
(((((.((..(((((((((((((((((((((....))))).......((((((.....))))))...))))))))))))))))..)).)))))..((((((........))))))..... ( -47.10)
>DroWil_CAF1 132567 120 - 1
CUGGGGACUCCGUUUCAAAACCGCAGGAUUUCCAGUGACGAUUCUAAGGAAGUUCAUGGUCUCGAGUCCGUGAUUAUGAAAGGUUUCGUGAGCACGUCGCCAGACAUCAGAAGUGUAGAU
((((.(((...(((((.(((((...((((((((...((....))...))))))))((((((.((....)).))))))....))))).).))))..))).))))((((.....)))).... ( -33.60)
>DroAna_CAF1 90128 120 - 1
AUCCGGAGUUCGCUUCAGCACGGCAGGGUUUCCGGUUACGAUUCUCAGGAAGUUCACGGUUUCCAGGCCAUGAUUCUGGAAGGUUUCGUGGGCCCGCCGCCAAAUCUCCGGAGAGUAAAU
.(((((((...((....)).((((.(((((..(((..((..(((.(((((...(((.((((....)))).))))))))))).)).)))..)))))))))......)))))))........ ( -45.30)
>consensus
GUCCGGAGUUCGUUUCAAAACCGCAGGGUUACCGGUAACGAUUCUAAGGAAAUUCACGGUUUCCAAGCCGUGAUUUUGAAAAGUUUCAUGGGCCCGUCGCCAGAUUUCAGGAGAGAAUAC
.......(((((((((((((((((.((((((((..............))))))))..((((....)))))))))))))))(((((((((((.....))))))))))).....)))))).. (-20.64 = -22.26 +   1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:33 2006