Locus 826

Sequence ID 2L_DroMel_CAF1
Location 2,357,356 – 2,357,448
Length 92
Max. P 0.927745
window1341

overview

Window 1

Location 2,357,356 – 2,357,448
Length 92
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 72.61
Mean single sequence MFE -24.06
Consensus MFE -17.92
Energy contribution -17.08
Covariance contribution -0.84
Combinations/Pair 1.44
Mean z-score -1.31
Structure conservation index 0.74
SVM decision value 1.19
SVM RNA-class probability 0.927745
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2357356 92 + 22407834
ACUGGGCUGCCAACUCGUUUGCUUUGGGCGGCUGUUGGUUCGAUAGGUAUUUAAGCCAUAUCAGCUGUUCAUAAAUUAAUAGAUACACUGA--------C
.((((((.((......))..))).((((((((((.(((((..(.......)..)))))...))))))))))........))).........--------. ( -22.40)
>DroSec_CAF1 64135 100 + 1
ACUGGGCUGCCAACUCGUGUGCUUUAGGCAGCUGUUGGUUCGAUAGGUACUUAAGCCAUAUCAGCUGUUUAUAUUUUAUUAGAUGCACUGAAUUUAAGGC
.....(((......(((.((((..((((((((((.(((((..(.......)..)))))...)))))))))).((((....)))))))))))......))) ( -25.90)
>DroSim_CAF1 63411 100 + 1
ACUGGGCUGCCAACUCGUGUGCUUUAGGCAGCUGUUGGUUCGAUAGGUAUUUAAACCAUAUCAGCUGUUUAUAUAUUAUUAGAUACACCAAAUUUAAAGC
..(((....)))....(((((((.((((((((((.(((((..(.......)..)))))...)))))))))).........)).)))))............ ( -24.40)
>DroEre_CAF1 69193 75 + 1
GCUGGGCUGCCAACUCGUUUGCUUGGCACAGCUGUUGGCUCGAUAGGCAU-UAGGCCAUAUCAGCUGCUCU------------UUGUA------------
((..(((.((......))..)))..)).((((((.(((((..((....))-..)))))...))))))....------------.....------------ ( -28.00)
>DroYak_CAF1 67973 80 + 1
GCUGGGCUGCCAACUCGUUUGCUUGACACAGCUGUUGGUUCGAUAGGUAU-UAAGCUACAACAGCUGUUUA-------AUAAAUUCAA------------
..(((....)))....(((((.((((.(((((((((((((..((....))-..)))..)))))))))))))-------))))))....------------ ( -19.60)
>consensus
ACUGGGCUGCCAACUCGUUUGCUUUAGGCAGCUGUUGGUUCGAUAGGUAUUUAAGCCAUAUCAGCUGUUUAUA__UUAAUAGAUACAC__A________C
..(((....)))............((((((((((.(((((.............)))))...))))))))))............................. (-17.92 = -17.08 +  -0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:28 2006