| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,348,271 – 2,348,370 |
| Length | 99 |
| Max. P | 0.500000 |
| Location | 2,348,271 – 2,348,370 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 80.59 |
| Mean single sequence MFE | -29.48 |
| Consensus MFE | -13.12 |
| Energy contribution | -15.10 |
| Covariance contribution | 1.97 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.45 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2348271 99 + 22407834 UCGCUUUUGGCGAAUACAACUUUGCCGAAGGCCAAA--GUCAAAUCUGGGAAUACGCAACUCCC------GGGGCGAAUCAAGGAUAGAUGAAUCGCUGGCAUAAAC ..((((((((((((......))))))))))))....--((((..(((((((.........))))------)))((((.(((........))).))))))))...... ( -35.40) >DroSec_CAF1 55129 98 + 1 UCGCUUUUGGACAGUACAACU-UGCCGAAUGCCAAA--GUCAAAUCUGGGAAUACGCAAUUCCC------GGGGCGAAUCAAGGAUAGAUGAAUCGCUGGCAUAAAC ......((((.(((......)-))))))((((((..--......(((((((((.....))))))------)))((((.(((........))).)))))))))).... ( -30.40) >DroSim_CAF1 54389 98 + 1 UCGCUUUUGGCCAGUACAACU-UGCCGAAGGCCAAA--GUCAAAUCUGGGAAUACGCAAUUCCC------GGGGCGAAUCAAGGAUAGAUGAAUCGCUGGCAUAAAC ..(((((((((.((.....))-.)))))))))....--((((..(((((((((.....))))))------)))((((.(((........))).))))))))...... ( -37.00) >DroEre_CAF1 59746 87 + 1 UCGUUUUCGGCGUGUA------------AAAACAAA--GUCAAAUCUGGGAAUACGAAACUCCC------GGGGCGAAUCAAGGAUAGAUGAAGCGCUGGCAUAAAC ..(((((.........------------)))))...--((((..(((((((.........))))------)))(((..(((........)))..)))))))...... ( -18.70) >DroYak_CAF1 57895 98 + 1 UCGCUUUUGGUAAAUACAACU-UGCCGAAGGACAAC--GUCAAAUCUGGGAAUACGCAACUCCC------GGAGCGAAUCAAGGAUAGAGGAAUCGCUGGCAUAAAC ..(((((((((((.......)-))))))))).)...--((((..(((((((.........))))------)))((((.((..........)).))))))))...... ( -28.90) >DroAna_CAF1 58671 105 + 1 UCGUUUUGACCAAAUAAAAUC-CGGCUAAAGCCAAAACUUGAAAUCUGGGCAAA-GAAACUCCCCCUCAGGCGGAGAAUCAAGGAUAGACGAAACGGUGGCAUAAAC ((((((((.............-.(((....)))....(((((..(((......)-))..((((((....)).))))..)))))......)))))))).......... ( -26.50) >consensus UCGCUUUUGGCAAAUACAACU_UGCCGAAGGCCAAA__GUCAAAUCUGGGAAUACGCAACUCCC______GGGGCGAAUCAAGGAUAGAUGAAUCGCUGGCAUAAAC ..(((((((((............)))))))))......(((......((((.........))))........(((((.(((........))).))))))))...... (-13.12 = -15.10 + 1.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:25 2006