| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,339,676 – 2,339,771 |
| Length | 95 |
| Max. P | 0.500000 |
| Location | 2,339,676 – 2,339,771 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 76.48 |
| Mean single sequence MFE | -33.47 |
| Consensus MFE | -21.59 |
| Energy contribution | -20.82 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2339676 95 - 22407834 CGACGA---CGCAGACGUUUGAGGCUUUCCCGGCAACGGAGGCAAAGUGGUGAAGAUGCUGGGAGAUUCCUCCGAAGA---ACUGGA-GGAUCUGCUUGUUG ((((((---.(((((..........((((((((((.(...(.(.....).)...).)))))))))).(((((((....---..))))-)))))))))))))) ( -37.60) >DroPse_CAF1 94276 98 - 1 CGCCGAAGACGAUGUGGUGCGCGGUGCACCUGGCAGAGGCGGCAGAGUGGUGUAGAUGCUGGGUGUUUCCUCAGAGGAGGAACCAGCAGAAGCUG-AAG--- .((((...((......))...))))(((((..(((...(((.(.....).)))...)))..)))))((((((....)))))).((((....))))-...--- ( -37.00) >DroSec_CAF1 46213 95 - 1 CGACGA---CGCAGACGUUUGAGGCUUUCCCGGCAACGGAGGCAAUGUGGUGAAGAUGCUGGGAGAUUCCUCCGAAGA---ACUGGA-GGAUCUGCUUGCUG .(.(((---.(((((..........((((((((((.(...(.(.....).)...).)))))))))).(((((((....---..))))-)))))))))))).. ( -33.80) >DroEre_CAF1 51306 95 - 1 CGACGA---GGCAGAGGUCUGAGGCUUUCCUGGUAACGGAGGCAAGGUGGUGAAGAUGCUGGGAGAUUCCUCCGAAGA---ACUAGA-GGAUCUGCUUGCUG .....(---((((((..((.((((.(((((..(((.(...(.(.....).)...).)))..)))))..)))).))...---......-...))))))).... ( -25.94) >DroYak_CAF1 48157 95 - 1 CGACGA---CGCAGAGGUUUGAGGCUUUCCUGGUAACGGAGGCAAAGUGGUGAAGAUGCUGGGAGAUUCCUCCGAAGA---ACUGGA-GGAUCUGCUUGCUG .(.(((---.(((((..........(((((..(((.(...(.(.....).)...).)))..))))).(((((((....---..))))-)))))))))))).. ( -29.50) >DroPer_CAF1 105465 98 - 1 CGCCGAAGACGAUGUGGUGCGCGGUGCACCUGGCAGAGGCGGCAGAGUGGUGUAGAUGCUGGGUGUUUCCUCAGAGGAGGAACCAGCAGAAGCUG-AAG--- .((((...((......))...))))(((((..(((...(((.(.....).)))...)))..)))))((((((....)))))).((((....))))-...--- ( -37.00) >consensus CGACGA___CGCAGAGGUUUGAGGCUUUCCUGGCAACGGAGGCAAAGUGGUGAAGAUGCUGGGAGAUUCCUCCGAAGA___ACUAGA_GGAUCUGCUUGCUG ..........(((((.....((((.((((((((((.(...(.(.....).)...).))))))))))..))))...((.....)).......)))))...... (-21.59 = -20.82 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:19 2006