Locus 817

Sequence ID 2L_DroMel_CAF1
Location 2,331,085 – 2,331,180
Length 95
Max. P 0.903195
window1330

overview

Window 0

Location 2,331,085 – 2,331,180
Length 95
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 81.60
Mean single sequence MFE -14.43
Consensus MFE -9.44
Energy contribution -10.88
Covariance contribution 1.44
Combinations/Pair 1.07
Mean z-score -2.22
Structure conservation index 0.65
SVM decision value 1.03
SVM RNA-class probability 0.903195
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2331085 95 + 22407834
ACCUUGCUCUCCUAACACACA------CACACAUGUGGGCCCAAACCCAAAACGAAACCGAAACGCACACCAUCACAAUCCAAUAACAAAGCGGUGGGCAU
....(((((.((.........------........((((......))))...((....))................................)).))))). ( -14.70)
>DroSec_CAF1 37846 85 + 1
ACCUUGCUCUCCUAACACACAC----ACACACAUGCGUGCCCAAACCCA------------AACGCACACCAACGCAAUCCAAUAACAAAGCAGUGGGCAU
....(((...............----.......(((((...........------------.)))))..(((..((..............))..)))))). ( -11.64)
>DroSim_CAF1 37865 83 + 1
ACCUUGCUCUCCUAACACACA------CACACAUGCGUGCCCAAACCCA------------AACGCACACCAACGCAAUCCAAUAACAAAGCAGUGGGCAU
....(((..............------......(((((...........------------.)))))..(((..((..............))..)))))). ( -11.64)
>DroEre_CAF1 42753 75 + 1
ACCUUGCUCUCCUAACACAC--------ACACAUGCGUGCCCGAACU------------------CACACCAUCGCAAUCCAGUAACAAAGCGGUGGGCAU
....................--------....(((((((........------------------))).(((((((..............))))))))))) ( -15.24)
>DroYak_CAF1 38773 83 + 1
ACCUUGCUCCCCUAACACACACACACACACACAUGCGUGGCCAAACC------------------CACACCAUCGCAAUCCAGUAACAAAGCGGUGGGCAU
................................((((((((......)------------------))).(((((((..............))))))))))) ( -18.94)
>consensus
ACCUUGCUCUCCUAACACACA______CACACAUGCGUGCCCAAACCCA____________AACGCACACCAUCGCAAUCCAAUAACAAAGCGGUGGGCAU
................................((((((((........................)))).(((((((..............))))))))))) ( -9.44 = -10.88 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:17 2006