Locus 816

Sequence ID 2L_DroMel_CAF1
Location 2,325,555 – 2,325,648
Length 93
Max. P 0.671700
window1329

overview

Window 9

Location 2,325,555 – 2,325,648
Length 93
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 72.04
Mean single sequence MFE -28.63
Consensus MFE -13.91
Energy contribution -15.97
Covariance contribution 2.06
Combinations/Pair 1.16
Mean z-score -1.69
Structure conservation index 0.49
SVM decision value 0.29
SVM RNA-class probability 0.671700
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2325555 93 - 22407834
------UUGGUUGAUGG--GGAGGGGAAAUGCAGGCGGGAAGCGAUUUCAAGCUUCUGGUUUUCGCAUUUCGCAUUUGACUUGCAGCUUUCCCAUGGAGCU
------..(.((.((((--(((((.(((((((((((.((((((........)))))).))))..)))))))(((.......)))..))))))))).)).). ( -40.10)
>DroVir_CAF1 62756 89 - 1
---AA-AUGGUGGU-U--AUGUCAAGAAAAGCGCGCUAGAAAACAUUUCAACCUUCUGCCU----CGACUCGCAUUUGACUUGCAGCUUU-GAGUCAAGAU
---..-...(((((-(--..(...((((.((....)).(((.....)))....))))..).----.))).))).((((((((........-)))))))).. ( -13.30)
>DroSim_CAF1 32272 95 - 1
------UUGGAGGGUGGGGGGAGGGGAACUGCAGGCGGGAAGCGAUUUCAAGCUUCUGGUUUUCGCAUUUCGCAUUUGACUUGCAGCUUUCCCAUGCAGCU
------.....((.((.(((((((((((.(((((((.((((((........)))))).))))..))).)))(((.......)))..))))))).).)).)) ( -33.70)
>DroEre_CAF1 32576 91 - 1
------UCUAU--UUUG--GGAGGGGAAAUGCAGGCGGGAAGCGAUUUCAAGCUUCUGGUUUUCGCAUUUCGCAUUUGACUUGCAGCUUUUCCAUGGAGCU
------((((.--..((--(((((((((((((((((.((((((........)))))).))))..)))))))(((.......)))..))))))))))))... ( -33.90)
>DroYak_CAF1 33088 97 - 1
UUUUUUUUUUU--UUUG--GGUGGGGAAAUGCAGGCGGGAAGCGAUUUCAAGCUUCUGGUUUUCGCAUUUCGCAUUUGACUUGCAGCUUUCCCAUGGAGCU
........(((--..((--((..(((((((((((((.((((((........)))))).))))..)))))))(((.......)))..))..))))..))).. ( -33.00)
>DroMoj_CAF1 47522 92 - 1
ACCAA-AUGGCGGU-U--AUGUCAAGAAAAGCGCGCUAGAAAACAUUUCAACCGUCUGCUU----CGACUCGCAUUUGACUUGCAGCUCU-CCGUGAAGCU
.....-..((((((-(--...........((....)).(((.....)))))))))).((((----(.....(((.......))).((...-..))))))). ( -17.80)
>consensus
______UUGGUGGUUUG__GGAGGGGAAAUGCAGGCGGGAAGCGAUUUCAAGCUUCUGGUUUUCGCAUUUCGCAUUUGACUUGCAGCUUUCCCAUGGAGCU
.......................((((((.((..((.((((((........)))))).))...........(((.......))).))))))))........ (-13.91 = -15.97 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:16 2006