Locus 815

Sequence ID 2L_DroMel_CAF1
Location 2,322,627 – 2,322,730
Length 103
Max. P 0.653473
window1328

overview

Window 8

Location 2,322,627 – 2,322,730
Length 103
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 80.60
Mean single sequence MFE -23.24
Consensus MFE -11.09
Energy contribution -11.49
Covariance contribution 0.40
Combinations/Pair 1.09
Mean z-score -2.14
Structure conservation index 0.48
SVM decision value 0.25
SVM RNA-class probability 0.653473
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2322627 103 - 22407834
UUUAUUAAAUUAACUUUCUGGUCAGUAAACAUCUGAUGAGC-------UAUUUUAAGACCGAGAAAGUAAU-----UUCUUUUUGCAUGUACAAUAUGCAGAUUAAUAACUUAGC
.(((((((....(((((((((((..((((..((....))..-------...)))).)))).)))))))...-----.....(((((((((...))))))))))))))))...... ( -22.50)
>DroSec_CAF1 28773 102 - 1
UUUAUUAACUUAACUUACUGGUCAGUAAACAUCUGACGAGC-------UGUUUUAAGACCGAGAAAGUAAU-----UUCUU-UUGCAUGUACAAUAUGCAUACUAAUAACUUAGC
.((((((.(((((..((((.(((((.......))))).)).-------))..)))))...((((((....)-----)))))-.(((((((...)))))))...))))))...... ( -23.10)
>DroSim_CAF1 29370 102 - 1
UUUAUUAAAUUAACUUGCUGGUCAGUAAACAUCUGACGAGC-------UGUUUUAAGACCGAGAAAGUAAU-----UUCUC-UUGCAUGUACAAUAUGCAUACUAAUAACUUAGC
...........(((..(((.(((((.......))))).)))-------.)))(((((...((((((....)-----)))))-.(((((((...))))))).........))))). ( -27.10)
>DroEre_CAF1 29617 114 - 1
UUUAUUAAAUUAACUUGCUGGUCAGUGGACAUCCGCCGAGCCUUCCUCCGCUUUAAGACCGAGAAAGUACUUGUAAUUCCU-UUGCAUGCACAAUAUGCAGACUAAUAACUUAGC
.((((((.....((((.((((((.((((....)))).((((........))))...)))).)).))))............(-(((((((.....)))))))).))))))...... ( -24.60)
>DroYak_CAF1 30178 98 - 1
UUUAUAAAAUUAACUUGCUGGUCAGUU-----------AGCCUUCCUUUCCUUGAACACGGAGAAAGUAAU-----UUCUU-CUGCAUGUACAGUAUGCAGACUUAUAACUUAGC
.((((((.......((((((((.....-----------.)))....(((((........))))).))))).-----....(-(((((((.....)))))))).))))))...... ( -18.90)
>consensus
UUUAUUAAAUUAACUUGCUGGUCAGUAAACAUCUGACGAGC_______UGUUUUAAGACCGAGAAAGUAAU_____UUCUU_UUGCAUGUACAAUAUGCAGACUAAUAACUUAGC
.((((((.....((((.((((((.................................)))).)).))))..............(((((((.....)))))))..))))))...... (-11.09 = -11.49 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:16 2006