Locus 814

Sequence ID 2L_DroMel_CAF1
Location 2,321,579 – 2,321,676
Length 97
Max. P 0.713145
window1327

overview

Window 7

Location 2,321,579 – 2,321,676
Length 97
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 75.37
Mean single sequence MFE -22.40
Consensus MFE -13.59
Energy contribution -13.95
Covariance contribution 0.36
Combinations/Pair 1.07
Mean z-score -1.46
Structure conservation index 0.61
SVM decision value 0.38
SVM RNA-class probability 0.713145
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2321579 97 + 22407834
UCAGACUCCUUCUCCGGCAAUUCGAGAUUGCCUCUGCAGCUCCUACAG--CCACGCCC------UCCCCACCCAGUAA--CCGCCCCCUU-UUGGCUCUCGUCCAGUU
...(((.........(((.....(((.((((....))))))).....)--))......------..............--..(((.....-..)))....)))..... ( -16.30)
>DroSec_CAF1 27755 98 + 1
UCAGGCUUCUUCUUCGGCAAUUCGAGAUUGCCUCUCCAGCUCCUGCUG--ACACGCCC------UCCCCACCCAGUGC--CUGCCCCCUUUUUGGCUCUCAGCCAGUU
.(((((.........(((((((...)))))))....((((....))))--........------............))--)))........(((((.....))))).. ( -26.60)
>DroSim_CAF1 28345 98 + 1
UCAGGCUUCUUCUCCGGCAAUUCGAGAUUGCCUCUCCAGCUCCUACUG--CCACGCCC------UGCCCACCCAGUGC--CCGCCCCCUUUUUGGCUCUCGGCCAGUU
...(((.........((((....(((.(((......))))))....))--))..((.(------((......))).))--..)))......(((((.....))))).. ( -23.00)
>DroEre_CAF1 28535 82 + 1
UCUGGCUUCUUCUCCGGCAAUUCGAGAUUGCCUCUCCAGCACCUACGG--CCACGCCC------AC---------------CGCC--CC-UUUGGCUCUCGGCCAGUU
.((((((........(((((((...)))))))..............((--(...))).------..---------------.(((--..-...)))....)))))).. ( -21.50)
>DroYak_CAF1 29108 86 + 1
UCAGCCUUCUUCUCCGGCAAUUUGAGAUUGCCUCUCCAGCACCUACUGCACCACGCCC------UC---------------CGCCUCCU-UUUGGCUCCCGGCCAGUU
...(((.........(((.....((((.....))))..(((.....))).....))).------..---------------.(((....-...)))....)))..... ( -18.50)
>DroAna_CAF1 30572 100 + 1
UCAGGCUUCUUCUCGGGCAAUUCGAGAUUGCCUCC---GCUCCGAGCC--CCAGGCCCCAUCGUUCCUCGCCAUGCCAUUCUGCC--CA-CUUGGCUCUUGGCCAGUU
...(((((...(((((((.....(((.....))).---)).)))))..--..))))).........((.((((.((((.......--..-..))))...)))).)).. ( -28.50)
>consensus
UCAGGCUUCUUCUCCGGCAAUUCGAGAUUGCCUCUCCAGCUCCUACUG__CCACGCCC______UCCCCACCCAGU____CCGCCCCCU_UUUGGCUCUCGGCCAGUU
...((((........(((((((...)))))))..................................................(((........)))....)))).... (-13.59 = -13.95 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:14 2006