Locus 813

Sequence ID 2L_DroMel_CAF1
Location 2,314,569 – 2,314,663
Length 94
Max. P 0.719820
window1326

overview

Window 6

Location 2,314,569 – 2,314,663
Length 94
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 94.41
Mean single sequence MFE -23.50
Consensus MFE -20.02
Energy contribution -20.35
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.25
Structure conservation index 0.85
SVM decision value 0.40
SVM RNA-class probability 0.719820
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2314569 94 - 22407834
UGUGCCGCA--AUAGCAACAACGUUCAGUAACAACAACCAGCAACAACAACUGUGCGUUGUUCACUGCGGAAGCGGAAACUUCAAAGCGCAAACAC
(((((.((.--...))((((((((.((((....................)))).))))))))..((((....))))..........)))))..... ( -26.75)
>DroEre_CAF1 21541 94 - 1
UGUGCCGCA--AUAGCAACAACGUGCAGUAACAACAACCAGCCACAACAACUCUUCGUUGUUCGCUGCGGAAGCGGAAACUUCAAAGCGCAAACAC
(((((((((--...(((((((((...(((....................)))...))))))).))))))((((......))))...)))))..... ( -22.65)
>DroYak_CAF1 21461 96 - 1
UGUGCCGCAGAAUAGCAACAACGUUCAGUAACAACAACCAGCCACAACAACACUUCGUUGUUCACUGCGGAAGCGGAAACUUCAAAGCGCAAACAC
((((((((((............(((....))).............((((((.....))))))..)))))((((......))))...)))))..... ( -21.10)
>consensus
UGUGCCGCA__AUAGCAACAACGUUCAGUAACAACAACCAGCCACAACAACUCUUCGUUGUUCACUGCGGAAGCGGAAACUUCAAAGCGCAAACAC
(((((.((......))(((((((...(((....................)))...)))))))..((((....))))..........)))))..... (-20.02 = -20.35 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:14 2006