Locus 812

Sequence ID 2L_DroMel_CAF1
Location 2,313,339 – 2,313,429
Length 90
Max. P 0.511082
window1325

overview

Window 5

Location 2,313,339 – 2,313,429
Length 90
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 80.13
Mean single sequence MFE -18.64
Consensus MFE -12.02
Energy contribution -12.02
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.33
Structure conservation index 0.64
SVM decision value -0.04
SVM RNA-class probability 0.511082
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2313339 90 + 22407834
---UUUUUUGG-----CAAAGCACUUGGCCAG-GACCUUCAAAAGGAAUUGUUUGGCCAAAGAAAACAUAGAAAGGCACAGCAACAGAAAGUACGAAAA
---((((((((-----(...))..((((((((-(...(((.....)))...)))))))))........................)))))))........ ( -16.50)
>DroPse_CAF1 55917 81 + 1
---UUUUUCGGCCCGGACAGGCACUUGGCCAGGGACCUUCAAAAGGAAUUGUUUGGCCAAAGCAAACACAGAA---------------AAGGACGAAAA
---.(((((((((......)))..(((((((((.((((.....)))...).))))))))).............---------------.....)))))) ( -21.80)
>DroSec_CAF1 19504 92 + 1
UCUUUUUUUGG-----CAAAGCACUUGGCCAG-GACCUUCAAAAGGAAUUGUUUGGCCAAA-AAAACAUAGAAAGGCACAGCAACAGAAAGUACGUAAA
(((((((.(((-----(...))..((((((((-(...(((.....)))...))))))))).-....)).)))))))....................... ( -17.90)
>DroEre_CAF1 20257 90 + 1
---UUUUUUGG-----CAAAGCACUUGGCCAG-GACCUUCAAAAGGAAUUGUUUGGCCAAAGAAAACAUAGAAAGGCACAUCAUGAAAAAGUACGAAAA
---.(((((((-----(.......((((((((-(...(((.....)))...)))))))))......(((.((........))))).....)).)))))) ( -16.20)
>DroYak_CAF1 20220 90 + 1
---UUUUCUAG-----CAAAGCACUUGGCCAG-GACCUUCAAAAGGAAUUGUUUGGCCAACGAAAACAUAGAAAGGCACAUCAAGAAAAAGUACGAAAA
---(((((((.-----........((((((((-(...(((.....)))...)))))))))........)))))))........................ ( -17.63)
>DroPer_CAF1 64827 81 + 1
---UUUUUCGGCCCGGACAGGCACUUGGCCAGGGACCUUCAAAAGGAAUUGUUUGGCCAAAGCAAACACAGAA---------------AAGGACGAAAA
---.(((((((((......)))..(((((((((.((((.....)))...).))))))))).............---------------.....)))))) ( -21.80)
>consensus
___UUUUUUGG_____CAAAGCACUUGGCCAG_GACCUUCAAAAGGAAUUGUUUGGCCAAAGAAAACAUAGAAAGGCACA_CAA_A_AAAGUACGAAAA
........................((((((((...(((.....)))......))))))))....................................... (-12.02 = -12.02 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:13 2006