Locus 810

Sequence ID 2L_DroMel_CAF1
Location 2,305,781 – 2,305,881
Length 100
Max. P 0.657655
window1322

overview

Window 2

Location 2,305,781 – 2,305,881
Length 100
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 72.87
Mean single sequence MFE -32.40
Consensus MFE -12.35
Energy contribution -13.41
Covariance contribution 1.06
Combinations/Pair 1.15
Mean z-score -1.78
Structure conservation index 0.38
SVM decision value 0.26
SVM RNA-class probability 0.657655
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2305781 100 + 22407834
UGUCCGUCACUCAACUUUGAGUG----GAUACUUGACAGGGUUU-UAUGUGGAAGCUUGUCGCGAACAGGGCUUUGCAAACUUUGCA----------AAUCCUCUUCGCCGCUGC
(((((...(((((....))))))----))))...((((((.(((-(....)))).))))))(((((.((((.((((((.....))))----------)))))).)))))...... ( -34.70)
>DroSec_CAF1 11792 104 + 1
UGUCCGUCACUCGACUUUGAGUGGAUGGAUACUUGACAGGGUUU-UAUGUAGAAGCUUGUCGUGAACAGGGCUUUGCAGACUUGGCA----------AAUCCCCUUCGCCGCUGC
(((((((((((((....))))).))))))))...((((((.(((-(....)))).))))))(((((..(((.(((((.......)))----------)).))).)))))...... ( -37.80)
>DroSim_CAF1 12375 104 + 1
UGUCCGUCACUCGACUUUGAGUGGAUGGAUACUUGACAGGGUUU-UAUGUAGAAGCUUGUCGUGAACAGGGCUUUGCAGACUUGGCA----------AGUCCCCUUCGCCGCUGC
(((((((((((((....))))).))))))))...((((((.(((-(....)))).))))))(((((..((((((.((.......)))----------)))))..)))))...... ( -38.40)
>DroEre_CAF1 12007 86 + 1
UGUCCGUCACUCAACUUUGAGUG----GAUACUUGACACGGCUUUUAUGUAGAAGCUUAUCGCAG----GGA---------------------UUUGAAUCACCCUCGCUGCUGC
((((..(((((((....))))))----)......)))).(((((((....)))))))....((((----.((---------------------............)).))))... ( -21.90)
>DroYak_CAF1 12351 101 + 1
UGUCCGUCACUCGACAUUGAGUG----GAUACUUGACAGGGCUU-UGUGUAGCAGCUUAUCGCGA----ACCUUAGCUAACUUUAUAUAGAUAGAUGGAU-----ACGCUGCUGC
.((((.(((((((....))))))----)..........))))..-...((((((((.((((((..----......))....(((((....)))))..)))-----).)))))))) ( -29.20)
>consensus
UGUCCGUCACUCGACUUUGAGUG____GAUACUUGACAGGGUUU_UAUGUAGAAGCUUGUCGCGAACAGGGCUUUGCAAACUUGGCA__________AAUCCCCUUCGCCGCUGC
((((...((((((....))))))....))))...((((.(((((........)))))))))(((((..(((............................)))..)))))...... (-12.35 = -13.41 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:10 2006