Locus 807

Sequence ID 2L_DroMel_CAF1
Location 2,293,669 – 2,293,771
Length 102
Max. P 0.822958
window1319

overview

Window 9

Location 2,293,669 – 2,293,771
Length 102
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 78.78
Mean single sequence MFE -22.08
Consensus MFE -7.82
Energy contribution -7.82
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.98
Structure conservation index 0.35
SVM decision value 0.69
SVM RNA-class probability 0.822958
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2293669 102 - 22407834
UUUUUAGUUGAUUGAAAAAGGUGAUGUCAAGGUUUUUCUUU---UUCCUUUUUCCU----UCUUUGUUGACCUUUU---UC-------AGUUAAAUAUGAUAGAAGUUUUUCACGCUGA
((((((.(((((((((((((((.(...(((((.........---............----.))))).).)))))))---))-------))))))......))))))............. ( -20.05)
>DroPse_CAF1 32555 90 - 1
UUUUUAGUUGAUUGAAAAAGGUAAUGUCAAGGCUUUCUU------------UUUAU----GCUUUGUUGACCUUUUUUUUC-------AGCUAAAUAUUAUAGAAGUUUG-CAU-----
..(((((((((..(((((((((.....((((((......------------.....----))))))...))))))))).))-------)))))))...............-...----- ( -25.20)
>DroEre_CAF1 3288 102 - 1
UUUUUAGUUGAUUGAAAAAGGUGAUGUCAAGGUUUUCCUCU---UUCCCAUUUUCU----UCUUUGCUGACCUUUU---UC-------AGUUAAAUAUGAUAGAAGUUUUUCACUUUGA
...(((.(((((((((((((((.(.(.(((((.........---............----.))))))).)))))))---))-------))))))...)))..(((((.....))))).. ( -21.25)
>DroYak_CAF1 3428 102 - 1
UUUUUAGUUGAUUGAAAAAGGUGAUGUCAAGGUUUUCCUUU---UUCCUAUUUUAU----UCUUUGUUGACCUUUU---UC-------AGUUAAAUAUGAUAGAAGUUUUUCACUUUGA
...(((.(((((((((((((((.(...(((((.........---............----.))))).).)))))))---))-------))))))...)))..(((((.....))))).. ( -21.35)
>DroAna_CAF1 3565 119 - 1
UUUUUAGUUGAUUGAAAAAGGUGAUGUCAAGGUUUUUCACUUUUCUUCUAUUUUAUUCCCUCUUUGUUGACCUUUUUUUUCAGCUUUUCGUUAAAUAUGAUAGAAGUUUUGCACUUUGA
.....((((((..(((((((((.(...(((((.............................))))).).))))))))).))))))..((((.....))))..(((((.....))))).. ( -19.45)
>DroPer_CAF1 41562 90 - 1
UUUUUAGUUGAUUGAAAAAGGUGAUGUCAAGGCUUUCUU------------UUUAC----GCUUUGUUGACCUUUUUUUUC-------AGCUAAAUAUUAUAGAAGUUUG-CAU-----
..(((((((((..(((((((((.(...((((((......------------.....----)))))).).))))))))).))-------)))))))...............-...----- ( -25.20)
>consensus
UUUUUAGUUGAUUGAAAAAGGUGAUGUCAAGGUUUUCCU_U___UUCCUAUUUUAU____UCUUUGUUGACCUUUU___UC_______AGUUAAAUAUGAUAGAAGUUUUUCACUUUGA
...............(((((((.(...(((((.............................))))).).)))))))........................................... ( -7.82 =  -7.82 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:07 2006