| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,288,341 – 2,288,450 |
| Length | 109 |
| Max. P | 0.975552 |
| Location | 2,288,341 – 2,288,450 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 75.33 |
| Mean single sequence MFE | -19.10 |
| Consensus MFE | -12.13 |
| Energy contribution | -11.47 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.975552 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2288341 109 + 22407834 CAGCAGAAUAGGAAAGAAAUCUACCUAAUCUGAUGAUUACCCCUUAUCAUAUAUAUAUGUAUAUAUGUAUGUACCUUGCUGCUUAUUUUUUCAGACCGCCUGAAAAUAU .(((((...(((.............(((((....)))))........((((((((((....))))))))))..)))..)))))....(((((((.....)))))))... ( -25.60) >DroSec_CAF1 24451 82 + 1 CAGUAGAAUAAGAAAGAAAUCUCCCUAAUCGAAUGAUUAGCUCUUAUCA---------------------------UGCUGCUUAUUUUUUCAGACUGCCUGAAAGUAU (((((..((((((.((....))..((((((....)))))).))))))..---------------------------)))))......(((((((.....)))))))... ( -18.30) >DroSim_CAF1 26444 82 + 1 CAGUAGAAUAAGAAAGAAAUCUCCCUAAUCGAAUGAUUACCUCUGAUCA---------------------------UGCUGCUUAUUUUUUCAGACUGCCUGAAAGUAU .(((((....((..((....))..))......(((((((....))))))---------------------------).)))))....(((((((.....)))))))... ( -13.40) >consensus CAGUAGAAUAAGAAAGAAAUCUCCCUAAUCGAAUGAUUACCUCUUAUCA___________________________UGCUGCUUAUUUUUUCAGACUGCCUGAAAGUAU .(((((....(((......)))...(((((....))))).......................................)))))....(((((((.....)))))))... (-12.13 = -11.47 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:06 2006