Locus 805

Sequence ID 2L_DroMel_CAF1
Location 2,288,211 – 2,288,309
Length 98
Max. P 0.836797
window1317

overview

Window 7

Location 2,288,211 – 2,288,309
Length 98
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 92.54
Mean single sequence MFE -18.41
Consensus MFE -15.54
Energy contribution -15.58
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.52
Structure conservation index 0.84
SVM decision value 0.74
SVM RNA-class probability 0.836797
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2288211 98 - 22407834
CAUCUGUGAAUCAAUCGAAACUGCCCUCAGUGCCAUUAUUUAUACAGAGUGCCCCACAUAUGGCAUCAUUAAUUGUUCACCACACCC---AGUACUCUGCA
....(((((((.(((.(..((((....))))..)))))))))))((((((((........(((...((.....))....))).....---.)))))))).. ( -16.84)
>DroSec_CAF1 24321 98 - 1
CAUCCGUGAAUCAAUCGAAACUGCCCUCAGUGCCAUUAUUUAUACAGAGUGCCCCACAUGUGGCAUCAUCAAUUGUUCACCACAACC---AGUACUCCGCA
.....(((........(..((((....))))..)............((((((......(((((...((.....))....)))))...---.))))))))). ( -17.50)
>DroSim_CAF1 26314 98 - 1
CAUCCGUGAAUCAAUCGAAACUGCCCUCAGUGCCAUUAUUUAUACAGAGUGCCCCACAUGUGGCAUCAUCAAUUGUUCACCACAACC---AGUACUCCGCA
.....(((........(..((((....))))..)............((((((......(((((...((.....))....)))))...---.))))))))). ( -17.50)
>DroEre_CAF1 24414 98 - 1
CAUCCGUGAAUCAAUCGAAACUGCCCGCAGUGCUAUUAUUUAUCCUGAGUGCCCCACAUAUGGCCUCAUCAAUUGUUCACCACACCC---AGCACUCCGCA
.....(((((.((((.((.((((....))))..............((((.(((........))))))))).))))))))).......---.((.....)). ( -21.60)
>DroYak_CAF1 24815 101 - 1
CAUCCGUGAAUCAAUCGAAACUGCCCGCAGUGCUAUUAUUUAUCCAGAGUGCCCCACAUAUGGCAUCAUCAAUUGUUCACCACACUCCGCAGUACUCCGCU
.....(((((.((((.((.((((....))))...............((.((((........)))))).)).)))))))))........((........)). ( -18.60)
>consensus
CAUCCGUGAAUCAAUCGAAACUGCCCUCAGUGCCAUUAUUUAUACAGAGUGCCCCACAUAUGGCAUCAUCAAUUGUUCACCACACCC___AGUACUCCGCA
.....(((((.((((.((.((((....))))...............((.((((........)))))).)).)))))))))..................... (-15.54 = -15.58 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:05 2006