Locus 803

Sequence ID 2L_DroMel_CAF1
Location 2,284,469 – 2,284,566
Length 97
Max. P 0.570800
window1315

overview

Window 5

Location 2,284,469 – 2,284,566
Length 97
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 79.54
Mean single sequence MFE -19.74
Consensus MFE -14.62
Energy contribution -14.06
Covariance contribution -0.56
Combinations/Pair 1.15
Mean z-score -1.42
Structure conservation index 0.74
SVM decision value 0.07
SVM RNA-class probability 0.570800
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2284469 97 + 22407834
-----------------AUCAUCCUCAGCAUUAUCUUUCUACCCCAAUGAAAGGCAUUGCAACGGGUCAAAGGACACUUUUGUGCCAUUCAUUUGCAUCCUGCUUCCAGCCCAU
-----------------..........(((.(..(((((.........)))))..).)))...((((....((.(((....)))))........((.....)).....)))).. ( -21.40)
>DroSec_CAF1 20686 97 + 1
-----------------AUCAUCAUCAUCAUUAUCUUUCUGCCUCAAUGAAAGGCAUUGCAACGGGUCAAAGGACACCUUUGUGCCAUCCAUUUGCAUCCUGCUUCCAGCCCAU
-----------------.................(((((.........)))))(((.(((((..(((((((((...)))))).)))......)))))...)))........... ( -18.30)
>DroSim_CAF1 20960 114 + 1
UAAAUCCGUAUGCCAUCAUCAUCAUCAUCAUUAUCUUUCUGCCUCAAUGAAAGGCAUUGCAACGGGUCAAAGGACACCUUUGUGCCAUCCAUUUGCAUCCUGCUUCCAGUCCAU
..................................(((((.........)))))(((.(((((..(((((((((...)))))).)))......)))))...)))........... ( -18.30)
>DroEre_CAF1 20764 86 + 1
-------------C---A------------AACUCAUUCCGCCCUAAUGAAAGGCAUUGCAACGGGUCAAAGGACACCUUUGUGCCAUCCAUUUGCAUCCUGCUUCCAGCCCAU
-------------.---.------------...(((((.......))))).(((((.(((((..(((((((((...)))))).)))......)))))...)))))......... ( -17.40)
>DroYak_CAF1 21064 91 + 1
-------------C---AUCAUC-------AUCAAAUUCUGCCCUAAUGAAAGGCAUUGCAACGGGUCAAAGGACACCUUUGUGGCGUCCAUUUGCAUCCUGUUUCCAGUCCAU
-------------.---......-------......................((.((((.((((((.((((((((.((.....)).)))).))))...))))))..)))))).. ( -23.30)
>consensus
_____________C___AUCAUC_UCA_CAUUAUCUUUCUGCCCCAAUGAAAGGCAUUGCAACGGGUCAAAGGACACCUUUGUGCCAUCCAUUUGCAUCCUGCUUCCAGCCCAU
....................................................(((...(((..((((((((((((((....)))...))).)))).))))))).....)))... (-14.62 = -14.06 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:03 2006