| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,283,010 – 2,283,113 |
| Length | 103 |
| Max. P | 0.690474 |
| Location | 2,283,010 – 2,283,113 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 91.65 |
| Mean single sequence MFE | -24.61 |
| Consensus MFE | -19.60 |
| Energy contribution | -19.40 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.690474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2283010 103 + 22407834 CCCUUUUUCUUUGCGCUGCAACUCAUUAAAAAUGUUAAAGCGGCAUCAACAAAGCCAAACAAACGGAAAAGGAGA---------AAAACGCGAGGAGGGCGCUGAAAAAUCA .((((((((((((.(((..(((...........)))..)))(((.........)))...)))).))))))))...---------.....(((.......))).......... ( -21.60) >DroSec_CAF1 19217 103 + 1 CCCUUCUUCUGUGCGCUGCAACUCAUUAAAAAUGUUAAAGCGGCAUCAACAAAGCCAAACAAACGGUAAAGGAGG---------AAAACGCGAGGAGGGCGCUGGAAAAUCA ((((((((.(((..(((((....(((.....))).....))))).((..(...(((........)))....)..)---------)..))).))))))))............. ( -23.50) >DroSim_CAF1 19306 103 + 1 CCCUUCUUCUUUGCGCUGCAACUCAUUAAAAAUGUUAAAGCGGCAUCAACAAAGCCAAACAAACGGUAAAGGAGG---------AAAACGCGAGGAGGGCGCUGGAAAAUCA (((((((((((((((((..(((...........)))..)))(((.........))).........))))))))).---------....(....))))))............. ( -25.60) >DroEre_CAF1 19292 103 + 1 CCCUUCUUCUUUGCGUUGCAACUCAUUAAAAAUGUUAAAGCGGCAUCAACAAAGCCAAACAAACGGAAAGGGAGG---------GGAACGCGAGGAGGGCGGUGGAAAAUCA .((.(((((((((((((.(..(((........((((.....(((.........))).....))))......))).---------.)))))))))))))).)).......... ( -29.44) >DroYak_CAF1 19570 112 + 1 CCCUUCUUCUUUGCGUUGCAACUCAUUAAAAAUGUUAAAGCGGCAUCAACAAAGCCAAACAAACGGAAAAGGAAAAAAAAGGAAAAAACGCGAGGAGGGCGAUGGAAAAUCA ....(((((((((((((((....(((.....))).....))(((.........)))..............................))))))))))))).(((.....))). ( -22.90) >consensus CCCUUCUUCUUUGCGCUGCAACUCAUUAAAAAUGUUAAAGCGGCAUCAACAAAGCCAAACAAACGGAAAAGGAGG_________AAAACGCGAGGAGGGCGCUGGAAAAUCA ....(((((((((((((((....(((.....))).....)))))..........((........)).......................))))))))))............. (-19.60 = -19.40 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:00 2006