Locus 80

Sequence ID 2L_DroMel_CAF1
Location 278,338 – 278,430
Length 92
Max. P 0.664106
window122

overview

Window 2

Location 278,338 – 278,430
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 87.28
Mean single sequence MFE -23.52
Consensus MFE -16.54
Energy contribution -17.84
Covariance contribution 1.30
Combinations/Pair 1.21
Mean z-score -1.93
Structure conservation index 0.70
SVM decision value 0.28
SVM RNA-class probability 0.664106
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 278338 92 + 22407834
AACAUCUAAUGUACCUAAUGAUUUCAAAAGGUGGGGCCGAGUCUGUAUGAAAAUACAGAUUGUCGCAUUAUUUUCUGAUAAGGAGGUGCAUU
.......(((((((((....(((..((((((((.(((..(((((((((....)))))))))))).)))).))))..)))....))))))))) ( -30.30)
>DroSec_CAF1 403 92 + 1
AGCAUAUAAUGUACCUAAUGAUUUCAAGGGGUGGGGCCGAGUCUGUAUUGAAAUACAUAUUGUCACAUUAUUAUCUGAUAAGGAAGUGUAUU
.(((((((((((((((..((....))..))))..(((..(((.(((((....))))).)))))))))))))..(((.....))).))))... ( -16.10)
>DroSim_CAF1 403 88 + 1
AGCAUAUAAUGU----AAUGAUUUCAAGGGGUGGGGCCGAGUCUGUAUUGAAAUACAUAUUGUCACAUUAUUAUCUGAUAAGGAAGUGUAUU
.((((.......----.((((((((((...(..((......))..).))))))).))).((((((.((....)).))))))....))))... ( -13.60)
>DroEre_CAF1 409 92 + 1
AGCAUCUAAUGUACCUAAUGAUUUCAAGGGGUGGAGUCGAGUCUGUAUAGAAAUACAGAUUGCCGCAUUAUUUUCUGAUAAGGAGGUGCAUU
.......(((((((((..(....(((..((((((.((.((((((((((....))))))))).).)).))))))..)))..)..))))))))) ( -27.40)
>DroYak_CAF1 409 92 + 1
AGCAUCUAAUGCACCUAAUGAAUUCGAGGGGUGGCGUCGCGUCUGUAUAGAAAUACAGAUUGUCGCAUUAAUUUCUGAUAAGGAGAUGCAUU
.((((((....(((((..((....))..)))))(((.((.((((((((....)))))))))).))).................))))))... ( -30.20)
>consensus
AGCAUCUAAUGUACCUAAUGAUUUCAAGGGGUGGGGCCGAGUCUGUAUAGAAAUACAGAUUGUCGCAUUAUUUUCUGAUAAGGAGGUGCAUU
.(((((((((((((((..((....))..)))).......(((((((((....)))))))))...))))))...(((.....))))))))... (-16.54 = -17.84 +   1.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:14 2006