Locus 799

Sequence ID 2L_DroMel_CAF1
Location 2,281,488 – 2,281,600
Length 112
Max. P 0.577606
window1310

overview

Window 0

Location 2,281,488 – 2,281,600
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 91.15
Mean single sequence MFE -28.48
Consensus MFE -23.26
Energy contribution -23.38
Covariance contribution 0.12
Combinations/Pair 1.13
Mean z-score -1.36
Structure conservation index 0.82
SVM decision value 0.09
SVM RNA-class probability 0.577606
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2281488 112 - 22407834
UUCCUUUAUGAAUUCCUGUUCUGUAGAAAAUUUCUGCUAAUGGCAGAACCUGGAUUUCUGGCUCAAUUACAAAAAAUUAUGUUUGUGGAAUGGCUGGACUGGCGAGCUAAGA
.........(((.(((.(((((((.....(((......))).)))))))..))).)))((((((..(((((((........)))))))....(((.....)))))))))... ( -28.10)
>DroSec_CAF1 17659 112 - 1
UUCCUUUAUGAAUUCCGUUGCUGUAGAAAAUUUCUGCUAAUGGCAGAACCUGGAAUUCUGGCUCAAUUACAAAAAAUUAUGUUUGUGGAAUGGCUGGACUGGCGAGCUAAGA
.........((((((((((((((((((.....)))))....)))))....))))))))((((((..(((((((........)))))))....(((.....)))))))))... ( -29.80)
>DroSim_CAF1 17765 112 - 1
UUCCUUUAUGAAUUCCGUUGCUGUAGAAAAUUUCUGCUAAUGGCAGAACCUGGAUUUCUGGCUCAAUUACAAAAAAUUAUGUUUGUGGAAUGGCUGGACUGGCGAGCUAAGA
.........(((.((((((((((((((.....)))))....)))))....)))).)))((((((..(((((((........)))))))....(((.....)))))))))... ( -26.60)
>DroEre_CAF1 17764 111 - 1
UUCCUUUAUGAAUUCCUGUUUCUCAGAAAAUUUCUGCUAAUGGCAGAACCUGAAUUUCUGGCUCAAUUACAAA-AAUUAUUUUUGUGGAAUGGCCGGACUGGCGAGCUGAGA
............(((..((((.((((.....((((((.....))))))........(((((((...(((((((-(.....))))))))...))))))))))).)))).))). ( -29.70)
>DroYak_CAF1 18024 107 - 1
UUCCCUUAUGAAUUCCUGUUUUGUUGGAAUUUUCUGCUAAUGGCAGAAACUGGAUUUCUGGCUCAAUUACAAA-AAUUAUGUUUGUGGAAUGGCCGGACUGGCGAGCU----
...................(((((..(...(((((((.....))))))).......(((((((...(((((((-.......)))))))...))))))))..)))))..---- ( -28.20)
>consensus
UUCCUUUAUGAAUUCCUGUUCUGUAGAAAAUUUCUGCUAAUGGCAGAACCUGGAUUUCUGGCUCAAUUACAAAAAAUUAUGUUUGUGGAAUGGCUGGACUGGCGAGCUAAGA
.........(((.(((..(((....)))...((((((.....))))))...))).)))((((((..(((((((........)))))))....(((.....)))))))))... (-23.26 = -23.38 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:58 2006