Locus 794

Sequence ID 2L_DroMel_CAF1
Location 2,274,548 – 2,274,644
Length 96
Max. P 0.710524
window1301

overview

Window 1

Location 2,274,548 – 2,274,644
Length 96
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 94.55
Mean single sequence MFE -23.75
Consensus MFE -20.29
Energy contribution -20.43
Covariance contribution 0.14
Combinations/Pair 1.11
Mean z-score -1.68
Structure conservation index 0.85
SVM decision value 0.37
SVM RNA-class probability 0.710524
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2274548 96 - 22407834
UUUUUCCCC--UCUGCCUUCUGCGGUUUGCUUCCACUGGGCUCUUUUUGCCAUCCAUUGUCCUGGAUUGUGGUCACAGGGUUUAAAGUUUAAGCAAUU
.........--.((((.....)))).((((((..(((.((((((..(..(.(((((......))))).)..)....))))))...)))..)))))).. ( -22.90)
>DroSec_CAF1 10827 96 - 1
UUUUUCCAC--UCUGCCUUCUGCGGUUUGCUUCCACUGGGCUCUUUUUGCCAUCCAUUGUCCUGGAUUGUGGUCACAGGGUUUAAAGUUUAAGCAAUU
.........--.((((.....)))).((((((..(((.((((((..(..(.(((((......))))).)..)....))))))...)))..)))))).. ( -22.90)
>DroSim_CAF1 10813 96 - 1
UUUUUCCAC--UCUGCCUUCUGCGGUUUGCUUCCACUGGGCUCUUUUUGCCAUCCAUUGUCCUGGAUUGUGGUCACAGGGUUUAAAGUUUAAGCAAUU
.........--.((((.....)))).((((((..(((.((((((..(..(.(((((......))))).)..)....))))))...)))..)))))).. ( -22.90)
>DroEre_CAF1 10868 96 - 1
UUUUUCCAC--UCUGCCUUCUGCGGUUUGCUUCCACUGGGCUCUUUUUACCAUCCAUUGUCCUGGAUUGUGGUCACAGGGUUUAAAGUUUAAGCAAUU
.........--.((((.....)))).((((((..(((.((((((..((((.(((((......))))).))))....))))))...)))..)))))).. ( -22.70)
>DroYak_CAF1 11054 96 - 1
UUUUUCCAC--UCUGCCUUCUGCGGUUUGCUGCCACUGGGCUCUUUUUCCCAUCCAUUGUCCUGGAUUGUGGUCACAGGGCUUAAAGUUUAAGCAAUU
.........--.((((.....)))).(((((...(((.((((((....((((((((......)))).)).))....))))))...)))...))))).. ( -24.40)
>DroAna_CAF1 10349 98 - 1
UUUUUCAACUCUCUGCCCUUUGCGGUUUGCUUCCACAGGGCUCCUUUGGCCAUCCAUUGUCCUGGCUUGUGGUCACGGGGUUUAAAGUUUAAACAAUU
..............(((((.((.((......)))).))))).(((.((((((((((......)))...))))))).)))(((((.....))))).... ( -26.70)
>consensus
UUUUUCCAC__UCUGCCUUCUGCGGUUUGCUUCCACUGGGCUCUUUUUGCCAUCCAUUGUCCUGGAUUGUGGUCACAGGGUUUAAAGUUUAAGCAAUU
............((((.....)))).((((((..(((.((((((....((((((((......)))...)))))...))))))...)))..)))))).. (-20.29 = -20.43 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:49 2006