Locus 793

Sequence ID 2L_DroMel_CAF1
Location 2,270,209 – 2,270,315
Length 106
Max. P 0.936870
window1300

overview

Window 0

Location 2,270,209 – 2,270,315
Length 106
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 77.37
Mean single sequence MFE -21.54
Consensus MFE -13.48
Energy contribution -14.64
Covariance contribution 1.16
Combinations/Pair 1.15
Mean z-score -2.06
Structure conservation index 0.63
SVM decision value 1.26
SVM RNA-class probability 0.936870
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2270209 106 - 22407834
CCGGGCACACCAUAAAUACUUCGAAUAUC----------CGGCGAACAAACAACAGCAGGAGAUUGCAUAAAUCUCCAGUUGGAAGGGAUGAAAAAA--AGAAUAAAGGGAAUGGAAA
((((.....))..............((((----------((.....)......((((.(((((((.....))))))).))))....)))))......--........))......... ( -22.20)
>DroSec_CAF1 6556 105 - 1
CCGGAUAGACCAUA-AUACUUCGAAUAUC----------CGGCGAACAAACAACAGCAGGAGAUUGCAUAAAUCUCCAGUUGGAAGGGAUGAAAAAA-AAAUAUAAAGGGAAA-GAAA
(((((((.......-..........))))----------)))....((..(..((((.(((((((.....))))))).))))....)..))......-...............-.... ( -23.13)
>DroSim_CAF1 6580 107 - 1
CCGGAUAGACCAUAAAUACUUCGAAUAUC----------CGGCGAACAAACAAUAGCAGGAGAUUGCAUAAAUCUCCAGUUGGAAGGGAUGAAAAAAAAAAAAUAAAGGGAAA-GAAA
(((((((..................))))----------)))....((..(..((((.(((((((.....))))))).))))....)..))......................-.... ( -21.27)
>DroEre_CAF1 6598 110 - 1
CCGGGCAGACCAUAAAUACUUCGAAUAUCCUUCGUACUUCGGCGAACAAACAACAGCAGGAGAUUGCAUAAAUCUCCAGUUGGAAGGGAUGAA--------AAAAUUGGGAAAGGAAA
((((.....))..............((((((((((......))))........((((.(((((((.....))))))).))))...))))))..--------......))......... ( -26.50)
>DroAna_CAF1 6876 85 - 1
CCGGGCCGACCGUAAAUACUUCGAAUAUC----------CGACAAACAAACAGUAGCAGGAGAUUGCAUAAAUCUUCGCC-----------AA---AAAA-----AAGAGAAG-G---
.(((.....)))......((((.......----------......((.....)).((.(((((((.....))))))))).-----------..---....-----....))))-.--- ( -14.60)
>consensus
CCGGGCAGACCAUAAAUACUUCGAAUAUC__________CGGCGAACAAACAACAGCAGGAGAUUGCAUAAAUCUCCAGUUGGAAGGGAUGAAAAAA_AA_AAUAAAGGGAAA_GAAA
((((.....)).......((((..................(.....)......((((.(((((((.....))))))).)))))))).....................))......... (-13.48 = -14.64 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:48 2006