| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 267,707 – 267,817 |
| Length | 110 |
| Max. P | 0.721761 |
| Location | 267,707 – 267,817 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 88.54 |
| Mean single sequence MFE | -27.16 |
| Consensus MFE | -20.44 |
| Energy contribution | -20.25 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.721761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 267707 110 - 22407834 AACCCAUCUGUUUCUGUUUGACAACAGAAAAAAGCAACUC--CGUUGCUUUAGCAAUGCGAAAUGGUCGUCAAACCUGGUCGAACAUAAGGGAGCACUGAAAAAAAUUCUAC ..(((.....((((((((....))))))))((((((((..--.)))))))).......(((...(((......)))...))).......))).................... ( -24.40) >DroSec_CAF1 59523 112 - 1 UACCCAUCUUUAUUUGUUUGACAACAGAAAUAAGCGACUCCCCGUUGCUUUAGCAAUGCGAAAGGGUCCUCAAACCUGGUCGAACAUAAAGGCGCACUGAAAAAAAAUCUAC ......((((((..((((((((..(((.....((.(((((.(((((((....)))))).)...))))))).....))))))))))))))))).................... ( -25.80) >DroSim_CAF1 72709 112 - 1 AACCCAUCUUUGUUUGUUUGACAACAGAAAUAAGCGACUCCCCGUUGCUUUAGCAAUGCGAAAGGGUCGUCAAACCUGGUCGAACAUAAAGGCGCACUGAAAAAAAAUCUAC ......((((((..((((((((..(((......(((((((.(((((((....)))))).)...))))))).....))))))))))))))))).................... ( -28.20) >DroEre_CAF1 65670 111 - 1 GACCCACAUUUAUUUGUUUGACAACAGAAAUAAGCGACUCUCGGUUGCUUUAGCAAUGCGAAAGGGUCGUCAAACCGUGUCGAACAUGAG-GCGCACUCAAAAAAAUACUGC ..............(((((((((..........(((((((((((((((....))))).)))..))))))).......)))))))))((((-.....))))............ ( -30.23) >consensus AACCCAUCUUUAUUUGUUUGACAACAGAAAUAAGCGACUCCCCGUUGCUUUAGCAAUGCGAAAGGGUCGUCAAACCUGGUCGAACAUAAAGGCGCACUGAAAAAAAAUCUAC ......((((((..((((((((....(....(((((((.....)))))))...)..........(((......)))..)))))))))))))).................... (-20.44 = -20.25 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:12 2006