Locus 787

Sequence ID 2L_DroMel_CAF1
Location 2,250,594 – 2,250,714
Length 120
Max. P 0.767909
window1288

overview

Window 8

Location 2,250,594 – 2,250,714
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.33
Mean single sequence MFE -47.42
Consensus MFE -36.20
Energy contribution -37.20
Covariance contribution 1.00
Combinations/Pair 1.12
Mean z-score -1.82
Structure conservation index 0.76
SVM decision value 0.52
SVM RNA-class probability 0.767909
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2250594 120 - 22407834
GCGCCGCCGCUCUCUUAAAAGAUUCCUGUCAUGGAGACUCCGGCGGACCUCUCGUCUCCGGUGGCCAACUAGUUGGCAUUGUCUCCUACGGCAUUGGAUGCGCCAAUCCGUUCUUUCCCG
(((....))).......(((((..........((((((.((((.((((.....))))))))..(((((....)))))...)))))).((((.(((((.....)))))))))))))).... ( -40.30)
>DroSec_CAF1 10680 120 - 1
GGACCGCCGCUCUCGGAAGGGAUUCAUGUCGUGGAGACUCCGGCGGACCUCUCGUCUCCGGUGGCCAACUAAUUGGCAUUGUCUCCUACGGCAAAGGGUGCGCCAAUCCCUUCUUCCCCG
((....))......((((((((((..((((((((((((.((((.((((.....))))))))..(((((....)))))...)))))).))))))...((....))))))))))))...... ( -49.90)
>DroSim_CAF1 11063 120 - 1
GCGCCGCCGCUCUCGGAAGAGAUGCCUGUCGUGGAGACUCCGGCGGACCUCUCGUCUCCGGUGGCCAACUAGUUGGCAUUGUCUCCUACGGCAUAGGGUGCGCCAAUCCCUUCUUCCCCG
((((.(((((((((....)))).)).((((((((((((.((((.((((.....))))))))..(((((....)))))...)))))).))))))...)))))))................. ( -54.70)
>DroEre_CAF1 10817 120 - 1
GCGCCGCCGCUCUCGGAAAGGAUUCCUGUCAAGGAGACUCCGGAGGACCACUCGUCUCCGGUGGCCAACUGGUUGGCAUUGUCUCCUUUGGCUACGGCUGCGCAAAUCCUUUCUUCCCCG
((((.((((.....((((....)))).(((((((((((.(((((((........)))))))..(((((....)))))...)))))).)))))..)))).))))................. ( -51.90)
>DroYak_CAF1 12407 120 - 1
GCGCCGCCGCUCUCCUAAAGGAUUCCUGCCAAGGAGACUCCGGAGGACCUCUCGUCUCCGGUGGCCAACUGGUUGGCAUUGUGUCCCACGGCAUGUUGUGCGCAAUUCCCUUCUACCCCG
((((.((.((..(((....)))....((((..(((.((.(((((((........)))))))..(((((....)))))...)).)))...)))).)).))))))................. ( -40.30)
>consensus
GCGCCGCCGCUCUCGGAAAGGAUUCCUGUCAUGGAGACUCCGGCGGACCUCUCGUCUCCGGUGGCCAACUAGUUGGCAUUGUCUCCUACGGCAUAGGGUGCGCCAAUCCCUUCUUCCCCG
((((..((..(((......)))....((((((((((((.((((.((((.....))))))))..(((((....)))))...)))))).))))))..))..))))................. (-36.20 = -37.20 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:37 2006