| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,246,569 – 2,246,671 |
| Length | 102 |
| Max. P | 0.898265 |
| Location | 2,246,569 – 2,246,671 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 87.27 |
| Mean single sequence MFE | -31.35 |
| Consensus MFE | -24.15 |
| Energy contribution | -23.65 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.20 |
| Mean z-score | -3.48 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.898265 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2246569 102 + 22407834 GAUGAUUGUGUGUGAAUCCCCGAGGGCACAAUAUUUGCCCCUGAAUUUGAUUAUUUAAAUUUG--CACAUUCGUUUUCAUGGCGCAUAAAUUAUUUAUGAGCCC--- (((((.(((((............(((((.......)))))..((((((((....)))))))))--)))).))))).....(((.(((((.....))))).))).--- ( -28.00) >DroSec_CAF1 6859 104 + 1 GAUGAUUGUGUGUGAAUCCCCGAGGGCGCAAUAUUUGCCCCUGAAUUUGAUUAUUUAAAUUUGCGCACAUUCGUUUUCAUGGCGCAUAAAUUAUUUAUGAGCCC--- (((((.(((((((.........((((.(((.....)))))))((((((((....))))))))))))))).))))).....(((.(((((.....))))).))).--- ( -33.50) >DroSim_CAF1 7120 104 + 1 GAUGAUUGUGUGUGAAUCCCCGAGGGCGCAAUAUUUGCCCCUGAAUUUGAUUAUUUAAAUUUGCGCACAUUCGUUUUCAUGGCGCAUAAAUUAUUUAUGAGCCC--- (((((.(((((((.........((((.(((.....)))))))((((((((....))))))))))))))).))))).....(((.(((((.....))))).))).--- ( -33.50) >DroEre_CAF1 6849 102 + 1 GAUGAUUGUGUGCGAAUCCCCGAGGGCACAAUAUUUGCUCCUGAAUUUGAUUAUUUAAAUUUG--CACAUUCGUUUUCAUGGCGCAUAAAUUAUUUAUGAGCCC--- (((((..((((((.........((((((.......))).)))((((((((....)))))))))--)))))))))).....(((.(((((.....))))).))).--- ( -26.90) >DroYak_CAF1 7169 102 + 1 GAUGAUUGUGUGCGAAUACCCGAGGGCACAAUAUUUGCCCCUGAAUUUGAUUAUUUAAAUUUG--CACAUUCGUUUUCAUGGCGCAUACAUUAUGUAUGAGCCC--- (((((..((((((((((......(((((.......))))).(((((......))))).)))))--)))))))))).....(((.(((((.....))))).))).--- ( -32.10) >DroAna_CAF1 7850 96 + 1 GAUGAUUGUGAAAGAG-----GAGGGAAAA---C-CCUCACAGAAUUUGAUUAUUUAAAUUCU--CACAUUCGUUUUCGUGGCCUAUAAAUUAUUUAUGAGCCAUGG (((((.(((((.....-----(((((....---)-))))...((((((((....)))))))))--)))).)))))..((((((.(((((.....))))).)))))). ( -34.10) >consensus GAUGAUUGUGUGUGAAUCCCCGAGGGCACAAUAUUUGCCCCUGAAUUUGAUUAUUUAAAUUUG__CACAUUCGUUUUCAUGGCGCAUAAAUUAUUUAUGAGCCC___ (((((.((((.............(((((.......)))))..((((((((....))))))))...)))).))))).....(((.(((((.....))))).))).... (-24.15 = -23.65 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:31 2006