Locus 783

Sequence ID 2L_DroMel_CAF1
Location 2,238,169 – 2,238,268
Length 99
Max. P 0.804385
window1281

overview

Window 1

Location 2,238,169 – 2,238,268
Length 99
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 76.05
Mean single sequence MFE -17.99
Consensus MFE -11.77
Energy contribution -12.58
Covariance contribution 0.81
Combinations/Pair 1.21
Mean z-score -1.43
Structure conservation index 0.65
SVM decision value 0.63
SVM RNA-class probability 0.804385
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2238169 99 - 22407834
-----AAUUGUUACAUUACACAC---UUCAUCAAAGAAACACUACACGAAAUUAUUGUAAGGCCCACUUAUGUCCUUUAGCGAAUCAAAUGUUCAUCAGUGGGCUUU
-----..................---...................((((.....))))((((((((((.(((..(...............)..))).)))))))))) ( -17.06)
>DroSec_CAF1 20448 99 - 1
-----AAUUGUUACAUUACACAC---UUCAUCAAAGAAACACUAUACGAAAUUAUUGUAAGGCCCACUUAUGUCCUUUCACGAAUCAAGUGUUCAUCAGUGGGCUUU
-----..................---..................(((((.....)))))(((((((((.(((......(((.......)))..))).))))))))). ( -19.70)
>DroSim_CAF1 22316 99 - 1
-----AAUUGUUACAUUACACAC---UUCAUCAAAGAAACACUAUACGAAAUUAUUGUAAGGCCCACUUAUGUCCUUUCACGAAUCAAGUGUUCAUCAGUGGGCUUU
-----..................---..................(((((.....)))))(((((((((.(((......(((.......)))..))).))))))))). ( -19.70)
>DroEre_CAF1 19758 92 - 1
------------ACAUUCUACAU---GUUAUCAAGGAAACACUACUCGAAAUUAUUGUAAGGCCCAUUUAUGUCCAUCAACGAAUCAAGAGUUCAUCAGUGGGCCUU
------------...........---........(....)..................((((((((((.(((..(.((..........)))..))).)))))))))) ( -19.70)
>DroYak_CAF1 19430 99 - 1
-----AAUUGCUACAUUCUACAU---GUUAUCAAGGCAACACUACUCGAAAUUAUUGUAAGGCCCAUUUAUGUCCAUCAACGAAUCACGAGUUCAUCAGUGGGCCUU
-----..(((((((((.....))---))......)))))...................((((((((((.(((..(.((..........)))..))).)))))))))) ( -21.30)
>DroAna_CAF1 18774 104 - 1
UGAUUAAUU-UAACACAAUACGAUUAUUGGGCAACGAAAUA--AGUCAAAAUUAUUGUAAACAUCAAAAAUGUCCUUCAACGAUUGGAAACCACAUCAAUAUGCUAU
(((((.(((-(....(((((....)))))(....).)))).--))))).(((..(((...((((.....))))....)))..)))(....)................ ( -10.50)
>consensus
_____AAUUGUUACAUUACACAC___UUCAUCAAAGAAACACUACACGAAAUUAUUGUAAGGCCCACUUAUGUCCUUCAACGAAUCAAGAGUUCAUCAGUGGGCUUU
..........................................................((((((((((.(((..(...............)..))).)))))))))) (-11.77 = -12.58 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:30 2006