Locus 7820

Sequence ID 2L_DroMel_CAF1
Location 22,150,439 – 22,150,555
Length 116
Max. P 0.727758
window12532

overview

Window 2

Location 22,150,439 – 22,150,555
Length 116
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.13
Mean single sequence MFE -47.02
Consensus MFE -25.36
Energy contribution -26.33
Covariance contribution 0.98
Combinations/Pair 1.32
Mean z-score -2.04
Structure conservation index 0.54
SVM decision value 0.42
SVM RNA-class probability 0.727758
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 22150439 116 + 22407834
GACAAUGAGCUAACGAAGCUUCCAUCAGCAGCGGAUGGCG---GCAAUCGAGUUACUACCAUAGAUGUAGGAUCUACUUCGGCUCUUGUGCAACUGGAACUGGGCGAUGAUCAGAUUUG-
.((((.(((((..(((.(((.(((((.......))))).)---))..))).............((.((((...)))).)))))))))))..........((((.......)))).....- ( -27.40)
>DroVir_CAF1 35173 113 + 1
GACAGCGAGUUCAUCAAACUGCCAUCGGCGGCGGAUGGUGGCGGAAAUCGUGUGACCACCAUCGAUGUCGGCUCGCCGGCAGCUCUCGCUCAGCUGGA------CGAUGAUGAGCUCCU-
...((.((((((((((....(((...((((...((((((((((.(.....).)).))))))))..)))))))(((((((((((....)))..))))).------)))))))))))))))- ( -48.70)
>DroPse_CAF1 53525 111 + 1
GACAGCGAGUUCAUCAAGCUGCCUUCCGCAGCCGACGGCG---GUAAUCGGGUGACCACCAUCGAUGUCGGCUCGCCGGCAGCUCUCGCCAAGCUGGA------UGAUGAUGAGCUGCUG
..((((.((((((((((((((((...((.((((((((.((---((....((....))...)))).))))))))))..))))))).(((((.....)).------)))))))))))))))) ( -56.00)
>DroGri_CAF1 37750 113 + 1
GACAGUGAGUUCAUCAAGCUGCCCUCGGCGGCAGAUGGUGGUGGCAAUCGUGUGACCACCAUUGAUGUCGGCUCCCCCGCCGCCCUCGCCCAGCUGGA------CGAUGAUGAGCUGCU-
...(((.((((((((((((((.....((((((.(((((((((.(((....))).)))))))))......((.....))))))))......)))))...------...))))))))))))- ( -49.50)
>DroWil_CAF1 42394 113 + 1
GAUAGCGAGUUCAUCAAGCUGCCAUCGGCCGCAGAUGGCGGUGGCAAUCGUGUUACCACCAUUGAUGUCGGCUCUCCGGCUGCUUUGGCUCAACUGGA------UGAUGAUGAGCUGCU-
...(((.(((((((((.((.(((...((((((((((((.(((((((....))))))).)))))..)).)))))....))).))((..(.....)..))------...))))))))))))- ( -46.60)
>DroPer_CAF1 53447 111 + 1
GACAGCGAGUUCAUCAAGCUGCCUUCCGCAGCCGAUGGCG---GUAAUCGGGUGACCACCAUCGAUGUCGGCUCGCCGGCAGCUCUCGCCAAGCUGGA------UGAUGAUGAGCUGCUG
..((((.((((((((((((((((...((.(((((((..((---((....((....))...))))..)))))))))..))))))).(((((.....)).------)))))))))))))))) ( -53.90)
>consensus
GACAGCGAGUUCAUCAAGCUGCCAUCGGCAGCAGAUGGCG___GCAAUCGUGUGACCACCAUCGAUGUCGGCUCGCCGGCAGCUCUCGCCCAGCUGGA______CGAUGAUGAGCUGCU_
...(((.(((((((((.(((((.....)))))....((((...((.((((.((....))...))))(((((....))))).))...)))).................)))))))))))). (-25.36 = -26.33 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:36 2006