Locus 782

Sequence ID 2L_DroMel_CAF1
Location 2,234,645 – 2,234,765
Length 120
Max. P 0.610854
window1280

overview

Window 0

Location 2,234,645 – 2,234,765
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.22
Mean single sequence MFE -44.82
Consensus MFE -27.32
Energy contribution -26.68
Covariance contribution -0.63
Combinations/Pair 1.42
Mean z-score -1.56
Structure conservation index 0.61
SVM decision value 0.16
SVM RNA-class probability 0.610854
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2234645 120 + 22407834
AGGAGCGCAGGAAGCGGGGUGAAGAGUUGCCUUGGUCGUGAACCACGAAUUUGGUGGUCACCAAUGGAGGCAGCAAUCCUGGCUGGUUGGUCACAAACGGUCCUCCAGACAAUCGCUGGU
...((((...(...((((((.....((((((((.((.((((.((((.......))))))))..)).)))))))).)))))).((((..(..(......)..)..)))).)...))))... ( -43.50)
>DroVir_CAF1 195722 120 + 1
AGGAGCGUAUAAAGCGCGGCGAGGAAUUGCCCUGAUCGUGGACGACAAACUUCGUGGUCACCAGCGGCGGCAAUAGGCCAGCCUGAUUGGUCACAAAUGGACCUCCAGCGGCUUGCUGAU
....((((.....))))(((((....))))).((((((((((........)))))))))).(((((((.((....((((((.....)))))).....(((....))))).)).))))).. ( -40.60)
>DroGri_CAF1 196063 120 + 1
AAGAGCGUAUGAAGCGCGGCGAGGAGUUGCCCUGAUCGUGGACCACAAACUUGGUGGUGACCAGUGGUGGCAACAGGCCAGCCUGAUUGGUCACAAAGGCACCGCCGGCCGUUUGCUGAU
...((((.(((..((.((((((((......)))....(((.((((......)))).(((((((((((((((.....)))).))..))))))))).....))))))))))))).))))... ( -45.40)
>DroWil_CAF1 28078 120 + 1
AGGAACGUAGAAAACGUGGCGAUGAGUUGCCCUGAUCGUGAACUACGAAUUUCGUGGUGACCAAUGGCGGCAGAAGGCCAGGCUGAUUGGUCACAAAAGGACCACCGGCCAAACGUUGAU
...(((((........((((.....((((((......((..((((((.....)))))).))....)))))).....))))(((((..(((((.......))))).)))))..)))))... ( -39.50)
>DroMoj_CAF1 221930 120 + 1
AGGAGCGUAUGAAGCGCGGUGAGGAAUUGCCCUGAUCGUGCACCACAAACUUUGUGGUUACCAGCGGCGGCAAUAGGCCCGGCUGGUUUGUUACAAAGAUUCCACCGGCUGCUUGCUGAU
.((((........(((((((.(((......))).)))))))........((((((((..((((((.(.(((.....)))).))))))...)))))))).))))..((((.....)))).. ( -49.80)
>DroAna_CAF1 15292 120 + 1
AAGAGCGCAUGAAGCGAGGAGAGGAGUUGCCUUGGUCGUGGACCACAAACUUUGUGGUCACCAAUGGAGGCAACAGACCCGGCUGAUUGGUCACAAACGGGCCACCGGCCAAGCGCUGAU
...(((((............(.((.((((((((.((.(..(((((((.....)))))))..).)).))))))))...)))(((((..(((((.......))))).)))))..)))))... ( -50.10)
>consensus
AGGAGCGUAUGAAGCGCGGCGAGGAGUUGCCCUGAUCGUGGACCACAAACUUCGUGGUCACCAAUGGCGGCAACAGGCCAGGCUGAUUGGUCACAAACGGACCACCGGCCAAUCGCUGAU
....((((.....))))((......(((((((((...(((.(((((.......))))))))...))).)))))).((((.........)))).........))..((((.....)))).. (-27.32 = -26.68 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:29 2006