| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 22,125,921 – 22,126,041 |
| Length | 120 |
| Max. P | 0.510746 |
| Location | 22,125,921 – 22,126,041 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.08 |
| Mean single sequence MFE | -28.70 |
| Consensus MFE | -19.15 |
| Energy contribution | -18.93 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.510746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 22125921 120 - 22407834 GAAACCAACUUUUCCAAGCAAUUGUUUGGUUGCUACAAUUGCACAUCUGGGGUGUGAUUAUCACAUGCACAUCUACAUAUGUAUGUACAUGUGUGGGUACACCUAACAUAUUUAGUAACG ..............(((((....)))))(((((((..............(.(((((.....))))).)..((((((((((((....))))))))))))..............))))))). ( -31.70) >DroSec_CAF1 20344 106 - 1 GAAACCAACUUUUACAAGCAAUUGUUUGAGGGCUACAUCUGCACAUCUUGGGUGUGAUUAUCACACGCAUAUCUA--------ACUACAUGUGUGGGUACACCUAACAUAGUGA------ ........(((..((((....))))..)))...........(((((.(((((((((....(((((((..((....--------..))..))))))).))))))))).)).))).------ ( -27.30) >DroSim_CAF1 20770 106 - 1 GAAACCAACGUUUACAAGCAAUUGUUUGAGGGCUACAUCUGCACAUCUUGGGUGUGAUUAUCACAUGCAUAUCUG--------AGUACAUGUGUGGGUACACCUGUCAUAGUGA------ .........(((..(((((....)))))..)))...(((..(((((((..((((((...........))))))..--------))...)))))..))).(((........))).------ ( -27.10) >consensus GAAACCAACUUUUACAAGCAAUUGUUUGAGGGCUACAUCUGCACAUCUUGGGUGUGAUUAUCACAUGCAUAUCUA________AGUACAUGUGUGGGUACACCUAACAUAGUGA______ ..............(((((....)))))...((.......)).......(((((((....((((((........................)))))).)))))))................ (-19.15 = -18.93 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:29 2006