Locus 781

Sequence ID 2L_DroMel_CAF1
Location 2,234,163 – 2,234,281
Length 118
Max. P 0.574842
window1279

overview

Window 9

Location 2,234,163 – 2,234,281
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.07
Mean single sequence MFE -26.85
Consensus MFE -19.70
Energy contribution -19.86
Covariance contribution 0.16
Combinations/Pair 1.16
Mean z-score -1.64
Structure conservation index 0.73
SVM decision value 0.08
SVM RNA-class probability 0.574842
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2234163 118 - 22407834
UACUGCUGGGAACUUACGAGUUUCUGGCCACCAAGGAUUACUGUCGGGUAAGUUAUACAUAUAUUGGAAAUACUACUAAUAAUAUUUCU--AGACACCAAAAUGUGGUGCUUUUAAAAAU
....((..((((((....))))))..))(((((........((((..(((.....)))......((((((((.((....)).)))))))--)))))........)))))........... ( -26.59)
>DroSec_CAF1 16469 118 - 1
UACUGCUGGGAACUUACGAGUUCCUGGCAACCAAGGAUUACUGUCGGGUAAGUUAUACAUAUAUUCGAAAAACUACUAAUAAUAAUGCU--AGACACCAAAAUGUGGUGCUUUUAAAAAU
...(((..((((((....))))))..)))....((.((((.(((..(...((((................)))).)..))).)))).))--((.(((((.....)))))))......... ( -26.89)
>DroSim_CAF1 15549 118 - 1
UACUGCUGGGAACUUACGAGUUCCUGGCCACCAAGGAUUACUGUCGGGUAAGUUAUACAUAUAUUCGAAAAACUACUAAUAAUAAUUCU--AGACACCAAAAUGUGGUGCUUUUAAAAAU
....((..((((((....))))))..)).....(((((((.(((..(...((((................)))).)..))).)))))))--((.(((((.....)))))))......... ( -26.99)
>DroEre_CAF1 15689 116 - 1
UACUGCUGGGAACUUACGAGUUCCUGGCCACCAAGGAUUACUGUCGGGUAAGUU-A---UAUAUUGACAAUUCUGAAAAUAAUACUUUAAAAGACACCGAAAUGUGUUGCUUUUAAAAAU
....((..((((((....))))))..))........((((...(((((...(((-(---.....))))...)))))...))))..((((((((((((......))))..))))))))... ( -28.10)
>DroYak_CAF1 15363 117 - 1
UACUGCUGGGAACUUACGAGUUCCUGGCCACCAAGGAUUACUGUCGGGUAAGUUUU---UAUAUUGAAAAUUCUGGAAAUUAAACUUCAAAAGACACUAAAAGGCGGAGGUUUUAAAAAU
....((..((((((....))))))..)).....(((((..(((((.(((..(((((---(.....))))))(((.(((.......)))...))).)))....)))))..)))))...... ( -25.70)
>consensus
UACUGCUGGGAACUUACGAGUUCCUGGCCACCAAGGAUUACUGUCGGGUAAGUUAUACAUAUAUUGGAAAUACUACUAAUAAUAAUUCU__AGACACCAAAAUGUGGUGCUUUUAAAAAU
....((..((((((....))))))..)).(((...(((....))).))).............................................(((((.....)))))........... (-19.70 = -19.86 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:28 2006