| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 22,020,389 – 22,020,484 |
| Length | 95 |
| Max. P | 0.924824 |
| Location | 22,020,389 – 22,020,484 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 77.68 |
| Mean single sequence MFE | -28.70 |
| Consensus MFE | -17.59 |
| Energy contribution | -17.27 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.924824 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 22020389 95 + 22407834 AGACGAUAAACGUGGAGCAAGCCCAAAGGAUUCGG-A--GUCUGAGUUGCUAAAGGCGUGGCAUAGAUCCUGGUGGG----UUUUAUGCUUCGCUCCAUGCA ..........((((((((..(((...(((((((((-.--..))))))).))...)))(.(((((((((((....)))----.)))))))).))))))))).. ( -35.20) >DroSec_CAF1 63246 82 + 1 AGACGAUAAACGUGGAGCAAGCCCAAAGGAUUCGG-A---------------AAGGCGUGGCAUAGAUCCUGGUGGG----UUUUAUGCUUCGCUCCAUGCA ..........((((((((..(((............-.---------------..)))(.(((((((((((....)))----.)))))))).))))))))).. ( -28.66) >DroSim_CAF1 64442 82 + 1 AGACGAUAAACGUGGAGCAAGCCCAAAGGAUUCGG-A---------------AAGGCGUGGCAUAGAUCCUGGUGGG----UUUUAUGCUUCGCUCCAUGCA ..........((((((((..(((............-.---------------..)))(.(((((((((((....)))----.)))))))).))))))))).. ( -28.66) >DroEre_CAF1 71546 93 + 1 AGACGAUAAACGUGGAGCAG--CAAAAGGAUUCGG-A--GUCUGAGGGGCCAAAGGCGUGGCAUAGAUUCUGGUGGG----UUUUAUGCUUCGCUCUAUGCA ..........((((((((((--((.((((..((((-(--(((((....((((......)))).))))))))))....----)))).))))..)))))))).. ( -32.40) >DroYak_CAF1 56747 86 + 1 AGACGAUAAACGAGGAACAAGCCAAAAGGAUUCGG-A--GUCUGAG---------GCGUGGCAUAGAUCCUGGUGGG----UUUUAUGCUUCGUUCUAUGCA ..........((.(((((..(((....((((....-.--))))..)---------))(.(((((((((((....)))----.)))))))).)))))).)).. ( -24.10) >DroAna_CAF1 63576 93 + 1 GGGCGAUAAACGCGGAGCAAGCCCAAAGGAUACAAGAAAGGAU---------ACGAUGUGGCAGGGAUACCAGAGGGGUCUUUUUUUGUCUAGCUAUAUGCA ((((................)))).......((((((((((((---------....(.(((........))).)...))))))))))))...((.....)). ( -23.19) >consensus AGACGAUAAACGUGGAGCAAGCCCAAAGGAUUCGG_A__GUCU_________AAGGCGUGGCAUAGAUCCUGGUGGG____UUUUAUGCUUCGCUCCAUGCA ..........((((((((...((....))............................(.(((((((((((....))).....)))))))).))))))))).. (-17.59 = -17.27 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:11 2006