Locus 7792

Sequence ID 2L_DroMel_CAF1
Location 21,964,000 – 21,964,115
Length 115
Max. P 0.706904
window12492

overview

Window 2

Location 21,964,000 – 21,964,115
Length 115
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.94
Mean single sequence MFE -25.54
Consensus MFE -19.97
Energy contribution -20.25
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -1.42
Structure conservation index 0.78
SVM decision value 0.37
SVM RNA-class probability 0.706904
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21964000 115 + 22407834
CGGUUAUUUAUUUUUGCUUCAGUGCGAAGUGUCACCGACUUCGCAGCGCUUCCAUCAAUCAAUCGCUUCGAAUUAUAAAUAACCAAA-ACC-UC--C-UCGGGGCUGCCGUCCGAUUACA
.((((((((((.((((......((((((((.......))))))))(((...............)))..))))..))))))))))...-...-..--.-...((((....))))....... ( -28.16)
>DroVir_CAF1 4560 100 + 1
CGGCUAUUUAUUUUUGC-GCACUGCCAAGUGUCACCGACUUUGCGGCGAUUCCAUCAAUCAAUCGCGUCGAAUUAUAAAUAACCAAC-GAU-----A-UUGCGACUG-C-----------
.((.(((((((.(((((-((.((((.((((.......)))).)))).((((.....))))....))).))))..))))))).))...-...-----.-.........-.----------- ( -22.10)
>DroPse_CAF1 34075 114 + 1
CGGUUAUUUAUUUUUGCCUCAGUGCCAAGUGUCACCGACUUUGCAGCGAUUCCAUCAAUCAAUCGCUUCGAAUUAUAAAUAACCAAAAACC-UC--CAUCGGGG---CCGACCGAUUGCC
.((((((((((.((((......(((.((((.......)))).)))((((((.........))))))..))))..)))))))))).......-..--.(((((..---....))))).... ( -28.10)
>DroMoj_CAF1 17115 105 + 1
CGGCUAUUUAUUUUUGC-GCACUGCCAAGUGUCACCGACUUUGCGGCGAUUCCAUCAAUCAAUCGCAUCGAAUUAUAAAUAACCAAC-GACGUGACG-UUCCAACUC-C-----------
.((.(((((((..((..-(((((....)))))...(((...(((((.((((.....))))..))))))))))..))))))).))(((-(......))-)).......-.----------- ( -19.80)
>DroAna_CAF1 20126 115 + 1
CGGUUAUUUAUUUUUGCCUCAGUGCCAAGUGUCACCGACUUUGCAGCGAUUCCAUCAAUCAAUCGCUCCGAAUUAUAAAUAACCAAA-ACC-AC--C-UCGGGGCCGCCAUCCGAUUGCC
.((((((((((.((((......(((.((((.......)))).)))((((((.........))))))..))))..))))))))))...-...-..--.-(((((.......)))))..... ( -27.00)
>DroPer_CAF1 33926 114 + 1
CGGUUAUUUAUUUUUGCCUCAGUGCCAAGUGUCACCGACUUUGCAGCGAUUCCAUCAAUCAAUCGCUUCGAAUUAUAAAUAACCAAAAACC-UC--CAUCGGGG---CCGACCGAUUGCC
.((((((((((.((((......(((.((((.......)))).)))((((((.........))))))..))))..)))))))))).......-..--.(((((..---....))))).... ( -28.10)
>consensus
CGGUUAUUUAUUUUUGCCUCAGUGCCAAGUGUCACCGACUUUGCAGCGAUUCCAUCAAUCAAUCGCUUCGAAUUAUAAAUAACCAAA_ACC_UC__C_UCGGGGCUGCCG_CCGAUUGCC
.((((((((((.((((......(((.((((.......)))).)))((((((.........))))))..))))..)))))))))).................................... (-19.97 = -20.25 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:59 2006