Locus 7780

Sequence ID 2L_DroMel_CAF1
Location 21,936,299 – 21,936,394
Length 95
Max. P 0.779860
window12475

overview

Window 5

Location 21,936,299 – 21,936,394
Length 95
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 77.43
Mean single sequence MFE -20.26
Consensus MFE -11.02
Energy contribution -12.86
Covariance contribution 1.84
Combinations/Pair 1.06
Mean z-score -1.93
Structure conservation index 0.54
SVM decision value 0.55
SVM RNA-class probability 0.779860
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21936299 95 + 22407834
UAGUAUGUCAAUCUGUCCAAUUCAUUCACUCACCCGGCCAGACAGGACGUCAGGCCGUCACUCACUCACUCAAUUCAAA-------------------------CCUUGGCAAACUAAAC
((((.((((((..((.......))..........(((((.(((.....))).)))))......................-------------------------..)))))).))))... ( -19.50)
>DroSec_CAF1 224589 95 + 1
UAGUAUGUCAAUCUGUCCAAUUCAUUCACUCACCCGGCCAGACAGGACGUCAGGCCGUCACUCACUCACUCAAUUCAAA-------------------------CCUUGGCAAACUAAAC
((((.((((((..((.......))..........(((((.(((.....))).)))))......................-------------------------..)))))).))))... ( -19.50)
>DroSim_CAF1 169363 94 + 1
UAGUAUGUCAAUCUGUCCAAUUCAUUCACUCACCCGGCCAGACAGGACGUCAGGCCGUCACUCACUCACUCAAUUCAAA-------------------------CCUUGGCAAACUA-AC
((((.((((((..((.......))..........(((((.(((.....))).)))))......................-------------------------..)))))).))))-.. ( -19.50)
>DroYak_CAF1 186821 81 + 1
UAGUACGUCAAUCUGUCCAAUUCAUUCACUCACUCGGCCAGACAGGACGUCAGGCCG----UCACUCAUUCAGAUCA-----------------------------------AACUAAAC
((((......(((((...................(((((.(((.....))).)))))----.........)))))..-----------------------------------.))))... ( -14.89)
>DroAna_CAF1 164951 119 + 1
GAGUACGUCAAUCCGUCCAACUCAUUCACUCAUUUGGCCAGACAGGAUGUCAG-CCGUCACUCACUCACUCAAUUCAGAGCCAAAGCCAAAGCUCGAGCCAGAGCCAUGGAAAACCGAGG
(((((((......)))...)))).....(((.((((((..(((.((.......-)))))..........((......)))))))).(((..((((......))))..)))......))). ( -27.90)
>consensus
UAGUAUGUCAAUCUGUCCAAUUCAUUCACUCACCCGGCCAGACAGGACGUCAGGCCGUCACUCACUCACUCAAUUCAAA_________________________CCUUGGCAAACUAAAC
((((.(((((....(.......)...........(((((.(((.....))).)))))..................................................))))).))))... (-11.02 = -12.86 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:44 2006